PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010076-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 177aa    MW: 20096.1 Da    PI: 5.9806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010076-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-052345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C +C++sFs+   L  H r+H
  AHYPO_010076-RA 23 HVCDICDQSFSSGQALGGHKRKH 45
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-52048No hitNo description
PROSITE profilePS501579.4732350IPR007087Zinc finger, C2H2
PfamPF139121.1E-102346IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDKGKTKHDD HHHDDHEKKD NKHVCDICDQ SFSSGQALGG HKRKHYFKNK NNPNQTLIET  60
HMIVSGSNTG QRSSQTEPDG NAPPMEEVVR GEDIYYDEII KKIRKNTEGL EKYDDDEIYF  120
LQEELGLTIP PYKPCFLNKK KKLNLDDPIL KEALNLTQVN DSDSNSGSST ENTHTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-09salt tolerance zinc finger