PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009900-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 393aa    MW: 43277.6 Da    PI: 9.2958
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009900-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19206256256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  AHYPO_009900-RA 206 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAFAYDTAAYMLRGE 256
                      59******9.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-31205265No hitNo description
SuperFamilySSF541717.19E-23206264IPR016177DNA-binding domain
PROSITE profilePS5103222.761206263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-32206265IPR001471AP2/ERF domain
SMARTSM003802.0E-34206269IPR001471AP2/ERF domain
PRINTSPR003677.4E-11207218IPR001471AP2/ERF domain
PfamPF008472.8E-12207256IPR001471AP2/ERF domain
PRINTSPR003677.4E-11229245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MQTKMPPHFA LDEIVTKSHL LGGDGESNTC KNDFNSLSFT QIVGCNQFEP TCEYAKHNLI  60
LHHNTATVTS SGLDFTFPRA STFVNFFKSS ALTDPLSQTS PDSAAATPTN LSGLTLSQPL  120
GRSTHAFLAD PLLQRSHNQY LPGGRDQWLR MSEDYSLKVG SNEFRLSPSK TRPMKKSTGR  180
KLQNLLHSHK SSSPTASSSS AASGKLYRGV RQRHWGKWVA EIRLPRNRTR VWLGTFDTAE  240
DAAFAYDTAA YMLRGEYAHL NFPDQKHLLK TNSINGATAA LLEAKLKTIS EQNGLNSLKK  300
TGDLIPASSL LMNNMSDPNS TSSRSSSLVS MRKEWQFELE GRMIGSSQMI EINKRSLNEA  360
SSDPSLDAVQ LSRMPSLDID SIWDALLLSD TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21202273168ATERF1
3gcc_A1e-21202273168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745698.11e-150ethylene-responsive transcription factor ERF062-like
TrEMBLA0A0J8CM811e-140A0A0J8CM81_BETVU; Uncharacterized protein
STRINGXP_010673427.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-30ERF family protein