PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_009623-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 110aa MW: 13322.2 Da PI: 9.9416 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 24 | 75 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ e +++Le++Fe++++++ e++ ++Ak++gL+ rqV +WFqNrRa+++ AHYPO_009623-RA 24 NRLSIEKVKALEKHFEEENKLQPERKMKIAKEVGLEPRQVAIWFQNRRARWR 75 55788999*******************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114.5 | 6.5e-37 | 22 | 109 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk rls e+vk+LE++Feee+kL+perK+++a+e+gl+prqva+WFqnrRAR++tk+lEk+y++L+++ydalk + +L++++ +L + AHYPO_009623-RA 22 KKNRLSIEKVKALEKHFEEENKLQPERKMKIAKEVGLEPRQVAIWFQNRRARWRTKHLEKEYDHLRANYDALKLNYGSLQQQKCSLLQ 109 9*********************************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.633 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-14 | 19 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.27E-18 | 21 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.99E-11 | 22 | 78 | No hit | No description |
Pfam | PF00046 | 6.2E-16 | 24 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 25 | 84 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 48 | 57 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 57 | 73 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.2E-9 | 77 | 110 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MSAQKERIEE EDNEEKNGQI MKKNRLSIEK VKALEKHFEE ENKLQPERKM KIAKEVGLEP 60 RQVAIWFQNR RARWRTKHLE KEYDHLRANY DALKLNYGSL QQQKCSLLQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021859256.1 | 3e-51 | homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46667 | 1e-34 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A0K9QYP1 | 2e-43 | A0A0K9QYP1_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010675091.1 | 1e-48 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 2e-33 | homeobox protein 5 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_009623-RA |
Publications ? help Back to Top | |||
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