PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009524-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 236aa    MW: 27304.5 Da    PI: 6.3087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009524-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.97.1e-203380249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      i + ++++vtfskRr g++KKA+EL+ LC++  av+ fs++gkl+ +
  AHYPO_009524-RA 33 TITDPTKKHVTFSKRRVGLFKKASELCALCGVHMAVMTFSERGKLFCF 80
                     588999***************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.8942484IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-232483IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-2425102IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-142646IPR002100Transcription factor, MADS-box
PfamPF003193.7E-203480IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-144661IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-146182IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MANNNDNNEI KEDNKREGTN TRSNGRRRIP IATITDPTKK HVTFSKRRVG LFKKASELCA  60
LCGVHMAVMT FSERGKLFCF GHPNLDDIMN RYLSYRSCSI NKHDGYELVD EQNRQHNEIR  120
KRIDEEKKLS DHYMKNPETY DHDEEVCRCW WEETNINEMG LDELEEFQAC LMELRTNVVT  180
KVDQLIQMSL INPTNNRSNL HCTPSSSSTI LNTNYYNGYG FGNPELGVIE KDNVN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844412.14e-74agamous-like MADS-box protein AGL61
TrEMBLA0A0K9RPZ38e-73A0A0K9RPZ3_SPIOL; Uncharacterized protein
STRINGXP_010675367.15e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-30AGAMOUS-like 61