PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008672-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 535aa    MW: 59786 Da    PI: 5.3614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008672-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30237294260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +Dgy+WrKYGqK+vkgs++prsYY+C++++Cp+kkkver+  ++ v+ei+Y+g+Hnh+k
  AHYPO_008672-RA 237 EDGYCWRKYGQKQVKGSQNPRSYYKCSYPNCPTKKKVERAP-EGYVTEIVYKGSHNHPK 294
                      8****************************************.***************85 PP
2WRKY55.98.3e-184084452259
                      EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      rsYY+CtsagCpv+k++er+++d+++v++tYeg+Hnh+
  AHYPO_008672-RA 408 RSYYKCTSAGCPVRKHIERASHDTRAVITTYEGKHNHD 445
                      9************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26222295IPR003657WRKY domain
PROSITE profilePS5081123.479231447IPR003657WRKY domain
SuperFamilySSF1182902.22E-23233295IPR003657WRKY domain
SMARTSM007741.6E-31236294IPR003657WRKY domain
PfamPF031062.8E-23237293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-17382447IPR003657WRKY domain
SuperFamilySSF1182901.57E-14395447IPR003657WRKY domain
SMARTSM007745.6E-14403446IPR003657WRKY domain
PfamPF031061.8E-12408445IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSSSIARLEP NLSFNSNTFS FTNLMNSSSS FTDFFANTST NDGLEGDYHK QKNTNNDHDH  60
QDDINSKNNW HGFDQLIEVP KFKSLAPSSI SIGDNTSNTP FLNTPNAFSP SIFLDSPLLN  120
NFPSPTIGAF GGESFNWASS NDNNQLDAKN EGKNTTFSFH TQNPSNEGWS LSEPKKENEM  180
INNQQITSKS EFTIPNQIMP IEMNNIQTDS NNMQTNFNNN QQQQPIVQMN RAQKRAEDGY  240
CWRKYGQKQV KGSQNPRSYY KCSYPNCPTK KKVERAPEGY VTEIVYKGSH NHPKPQPGRR  300
SSLQSNCANG YDGSDGPNAS NVQAQNEYSN FNTPETSSVS LEEDDEFDQS SAMSKSVKED  360
DYEQPESKRW KGENEGEVMS GYGSRTVKEP RVIVQTTSEI DILDDGFRSY YKCTSAGCPV  420
RKHIERASHD TRAVITTYEG KHNHDVPAAR GSASYNNAPI PVRPSAINSQ PNQLISLRSL  480
NNDITSTSRP EARQAPFSVQ MLQNSNNFGF SGFGNASETK EEPMDNMFLD SFLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-19227448878Probable WRKY transcription factor 4
2lex_A1e-19227448878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106270.10.0PREDICTED: probable WRKY transcription factor 33
TrEMBLA0A0K9Q8X60.0A0A0K9Q8X6_SPIOL; Uncharacterized protein
STRINGXP_010683807.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-92WRKY DNA-binding protein 33