PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_008473-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | Dof | ||||||||
Protein Properties | Length: 179aa MW: 19604 Da PI: 9.4528 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.6 | 2.8e-38 | 20 | 79 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprC+s+ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+P+Ggg+rk k+ AHYPO_008473-RA 20 EQEQLKCPRCNSNNTKFCYYNNYNLSQPRHYCKNCKRYWTKGGSLRNIPIGGGTRKITKR 79 57899**************************************************97665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57783 | 8.84E-5 | 12 | 61 | No hit | No description |
ProDom | PD007478 | 1.0E-26 | 15 | 72 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 22 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.369 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MQDPSSLLVF PQLKQPEFPE QEQLKCPRCN SNNTKFCYYN NYNLSQPRHY CKNCKRYWTK 60 GGSLRNIPIG GGTRKITKRT SSKQRSSTDP GPGLNLAKPK GSGVMGISMA SEGQFGNMIL 120 EGMSLNGLKT GQDNRSDLDP GLELVHENNG STSEGLILGG GDQSLWNGTN NGYLHTRF* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021774198.1 | 3e-65 | dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A0K9RHW0 | 4e-56 | A0A0K9RHW0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690053.1 | 1e-51 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-37 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_008473-RA |