PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008111-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 269aa    MW: 30131.1 Da    PI: 4.1555
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008111-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.32.6e-181669158
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew 58
                     lppGfrFhPtdeel+++yL +kv ++++ + ++i evd++k+ePwdLp+ v    +ew
  AHYPO_008111-RA 16 LPPGFRFHPTDEELITHYLSQKVIDNNFAA-KAIGEVDLNKCEPWDLPRGV---WNEW 69
                     79*************************999.89**************9543...2334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-181265IPR003441NAC domain
PROSITE profilePS5100513.56516170IPR003441NAC domain
PfamPF023651.7E-81773IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MENMDVLVDE QEPMDLPPGF RFHPTDEELI THYLSQKVID NNFAAKAIGE VDLNKCEPWD  60
LPRGVWNEWV ICRVFHKSGA GKKIQFPGMT RSDSYGNEFN PSNNLPPLMD SSPYNTNYGS  120
VNVSCFSNPM ETAQSSHYLN TNQPSFNGLI NNSYNPSIPL NFVDNNSYFP TFDGINSYYP  180
SETGQYSGNY SDQRFLQAII ENNNGAKMKQ TMKTEMINYS PSEDTGLSTD MNAEVISNYD  240
MGRGPFHDPD GPSTSAGPVD LDSIWNNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-13962861Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678483.11e-90PREDICTED: NAC domain-containing protein 100
TrEMBLA0A1B2RWC98e-78A0A1B2RWC9_9CARY; NAC transcription factor 15
STRINGXP_010678483.15e-90(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.19e-33NAC domain containing protein 100