PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007994-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 277aa    MW: 33418.6 Da    PI: 6.9692
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007994-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.11.2e-2345128186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+ qe+++ + +r ++++++ ++k++k lWe +s k++++gf rs++qCk+kw+nl +ryk ++++e +    +s+++p++++++
  AHYPO_007994-RA  45 QWSIQETKEFLIIRADLDRNFMETKRNKLLWEVISTKLKDKGFLRSAEQCKCKWKNLVTRYKGCETMEPEA--IRSQQFPFYNEMQ 128
                      7********************************************************************95..77889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.42E-2044109No hitNo description
PfamPF138372.3E-1845130No hitNo description
PROSITE profilePS500906.70246102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEGHHNIHHQ HQHHSGYHHV QHHHHQMHQV QTNTVGGDAG DRFPQWSIQE TKEFLIIRAD  60
LDRNFMETKR NKLLWEVIST KLKDKGFLRS AEQCKCKWKN LVTRYKGCET MEPEAIRSQQ  120
FPFYNEMQAI FTARMQRMLW AEEEEEEEEE SDGEKTTTQK KKAKKPKLGH PSSTSNININ  180
TNINVIKEML EDFMKQQIQM EMQWKEAYEA REEQRMRMEM EWRQRMEALE NERLAMERAW  240
KERDDQRKMR EEARAEKRDA LITSLLNQIT RSHDDSN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855556.11e-101trihelix transcription factor GT-3b-like
SwissprotO804505e-72TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A4D9C6Y91e-102A0A4D9C6Y9_SALSN; Uncharacterized protein
STRINGXP_010676752.13e-99(Beta vulgaris)
STRINGXP_010264622.11e-100(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-52Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]