PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_007594-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 425aa    MW: 49266.2 Da    PI: 6.8252
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_007594-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.51e-24115212186
         trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                      +Wt+++v++Li+a++++ e+++ +g+           kk++W++vs++m+ergf +sp+qC++k+++lnkrykk++++ +k+ t++++++ +++
  AHYPO_007594-RA 115 KWTNSMVKLLITAVSYLSEESSlEGCtggrrkflnlHKKGKWKSVSIVMAERGFFVSPQQCEDKFNDLNKRYKKLNDILGKGtTCQVVEKPALL 208
                      7****************9999955557777889998**********************************************77******9999 PP

         trihelix  83 dqle 86 
                      d +e
  AHYPO_007594-RA 209 DMME 212
                      9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-21113238No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MESNLTLGNM MSSYGGSDLQ GSMRVNHHQN PSSLQQQHHH SQPVQGLMNH PSNVFPVQMG  60
QGHKCDHPKL GGDYKVEKGK NSATDEDELS SNEEGVEGQC DPCKGKRVAQ WQRVKWTNSM  120
VKLLITAVSY LSEESSLEGC TGGRRKFLNL HKKGKWKSVS IVMAERGFFV SPQQCEDKFN  180
DLNKRYKKLN DILGKGTTCQ VVEKPALLDM MEHLSEKTKD EVRKILSSKH LFYEEMCSYH  240
NNNRLHLPHD PALQMALQLA LRSRDDNDPD SRRDPHEDDE DDHDVETDDH EEYEETYSRR  300
SRDPFKRMKQ GLGLENFNFG AQSTQDYSKG FQLQSHNQCA ENPNAASLQM QWLRSQSLHL  360
EEQRLKIELE TLELEKERFK WQRFCKRKDR ELEKLKTEND KMRLENERIS LELKRMEMSV  420
KNTP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021771593.10.0uncharacterized protein LOC110735718
TrEMBLA0A0K9QGA50.0A0A0K9QGA5_SPIOL; Uncharacterized protein
STRINGEMJ020631e-156(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.16e-92