PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006674-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 325aa    MW: 37308.3 Da    PI: 9.0798
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006674-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2391.9e-1252114155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng....kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d   +n     k      ++lg +  ++ Aa+a++ a++k++g
  AHYPO_006674-RA  52 SKYRGVTRHRWTGRYEAHLWDkDAWNDtqkkKGrqvYLIWLGAYHDEDAAARAYDLAALKYWG 114
                      89*******************655555676522457889*******99*************98 PP
2AP249.31.2e-15157208155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+ + +g
  AHYPO_006674-RA 157 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAAAYDIAAIQHRG 208
                      89****99**********988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-952114IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1352124IPR016177DNA-binding domain
SMARTSM003807.5E-2053128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1353123IPR001471AP2/ERF domain
PROSITE profilePS5103218.72953122IPR001471AP2/ERF domain
PRINTSPR003674.7E-65465IPR001471AP2/ERF domain
PfamPF008473.8E-10157206IPR001471AP2/ERF domain
CDDcd000182.69E-14157218No hitNo description
SuperFamilySSF541711.96E-17157218IPR016177DNA-binding domain
SMARTSM003802.9E-27158222IPR001471AP2/ERF domain
PROSITE profilePS5103217.728158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18158217IPR001471AP2/ERF domain
PRINTSPR003674.7E-6198218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKAPNKKQK SKLHINKETS TSTHNLNKNS NPKAIKRTRK SLPRDSPFQR SSKYRGVTRH  60
RWTGRYEAHL WDKDAWNDTQ KKKGRQVYLI WLGAYHDEDA AARAYDLAAL KYWGGETLLN  120
FSLSTYDNEM KEMEGLTREE YIGSLRRKSN GFSRGVSKYR GVARHHHNGR WEARIGRVLG  180
NKYLYLGTFA TQEEAAAAYD IAAIQHRGQN AVTNFDVSRY MNLLDNSNKS CNAKSDQTSP  240
ENVAMPTMEH TQSFVDDEFM WGPQLPTPYC SSNLFDFNEY NNNSLLQYTF LDNNNNDVNI  300
GNNQQYSFSD ITSLLCDFDG MEDN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849481.11e-141AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotQ94AN41e-87AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0K9QHQ51e-140A0A0K9QHQ5_SPIOL; Uncharacterized protein
STRINGXP_010687653.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-88AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]