PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_005940-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 27882.2 Da PI: 8.9573 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF + L H +H AHYPO_005940-RA 93 YKCSVCDKSFGSYQALGGHKASH 115 9*********9999998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-14 | 92 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.39E-8 | 92 | 166 | No hit | No description |
PROSITE profile | PS50157 | 9.91 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0084 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.9E-9 | 144 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.1 | 144 | 166 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.642 | 144 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 146 | 166 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MALEALNSPT TPHAPFKFDD RSFDHFIKKK RSKRCRSDMS PPSTTAEHRL SEEEYLAFCL 60 LMLAKGGATK NNQNPLKIEK NDQNPEIDSK LVYKCSVCDK SFGSYQALGG HKASHRKPTG 120 EDNKPTSSSA TTSSVAAGVA GKSHQCSICF KCFPTGQALG GHKRCHYEGT IGGAKSGSGT 180 ASGVTASEGV GSSYSLSRGN GGSRDFDLNL PALPDFLPVD FFKVRNQSQG FCVDEEVESP 240 HPSKKPRLVL TMSKQGTNQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021759526.1 | 1e-113 | zinc finger protein ZAT10-like | ||||
TrEMBL | A0A0K9RUY3 | 1e-105 | A0A0K9RUY3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010688220.1 | 2e-98 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-48 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_005940-RA |