PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005861-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 181aa    MW: 20544.7 Da    PI: 6.3497
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005861-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.12.9e-163081556
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                     ++ +r+++NRe+ArrsRqRK++ ++ L   v++L++eN +   ++++ ++++
  AHYPO_005861-RA 30 RKRKRMASNRESARRSRQRKQKHLDDLMGQVDQLKKENNQILPTINHTTQQY 81
                     6789*************************************99999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-192690IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-1128105No hitNo description
PROSITE profilePS5021711.1162891IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.5E-133083No hitNo description
PfamPF001701.3E-123085IPR004827Basic-leucine zipper domain
CDDcd147025.02E-193181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MACSSGNSMT SNHLQNSGSE GDLQQVMDER KRKRMASNRE SARRSRQRKQ KHLDDLMGQV  60
DQLKKENNQI LPTINHTTQQ YLSIEAENSI LKAQINELSQ RLQSLNDILN YMNTLNGINS  120
SLEDDNLGID NLGHFGIFNG YFNNFIPNNN SDIFINNNNN PWNLGYLNQP IMASSDVLHY  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKRKRMASNRESARRSRQRKQK
24248RRSRQRK
34249RRSRQRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672909.22e-83PREDICTED: bZIP transcription factor 44
SwissprotC0Z2L59e-45BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0K9REL18e-71A0A0K9REL1_SPIOL; Uncharacterized protein
STRINGXP_010672920.18e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-40basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]