PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005781-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 295aa    MW: 34232.4 Da    PI: 8.104
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005781-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS109.16.1e-341180165346
             GRAS 165 LakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFle 255
                      ++kfA+ +gvpf+fnv+   ++l++++ e+L ++ gEa++Vn++ +l+r+       e++r+ v+++++sl+P +v++ve+e+d+  ++++Fl 
  AHYPO_005781-RA   1 MEKFARLMGVPFKFNVIgGLDHLDEIKKEDLGIQDGEAIVVNCIQALQRVQ------EEKRSVVIDTIRSLNPSIVTIVEEEIDLttTKNDFLM 88 
                      689*************97788*****************************8......45577899*****************998656779*** PP

             GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                       f e++++y   f++le+++ + s+er k+Er   +r+iv+ +ac  ++     r +++++W ++l+ea F+p +++e++  ++++llr+++ s
  AHYPO_005781-RA  89 CFQECFRFYKLYFEMLEESFLPISNERLKLERL-RSRHIVKTLACDIDSgeEYWRPNKASQWTKKLKEA-FSPFHFNEEIIGDVQALLRRYNtS 180
                      *****************9999***********9.9**********97762245699***********98.********************9944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.5771187IPR005202Transcription factor GRAS
PfamPF035142.1E-311180IPR005202Transcription factor GRAS
ProDomPD0103613.0E-27192257IPR002675Ribosomal protein L38e
PfamPF017811.0E-30192255IPR002675Ribosomal protein L38e
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEKFARLMGV PFKFNVIGGL DHLDEIKKED LGIQDGEAIV VNCIQALQRV QEEKRSVVID  60
TIRSLNPSIV TIVEEEIDLT TTKNDFLMCF QECFRFYKLY FEMLEESFLP ISNERLKLER  120
LRSRHIVKTL ACDIDSGEEY WRPNKASQWT KKLKEAFSPF HFNEEIIGDV QALLRRYNTS  180
WDLALPQRID QPKQIHEIKD FLLTARRKDA RSIKIKRSKD VVKFKVRCSK YLYTLCVFDT  240
EKADKLKQSL PPEIPSQRTT SAEGKMDIET EGNKNGAIYS GNKLLEVYGK QEPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-381177259441Protein SHORT-ROOT
5b3h_B2e-381177205387Protein SHORT-ROOT
5b3h_E2e-381177205387Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672262.11e-100PREDICTED: protein SHORT-ROOT
RefseqXP_021752366.11e-100protein SHORT-ROOT-like
TrEMBLA0A0K9QY052e-91A0A0K9QY05_SPIOL; Uncharacterized protein
STRINGXP_010672262.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-39GRAS family protein