PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005465-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 292aa MW: 31772.2 Da PI: 8.5017

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005465-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	225	247	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C C+++F + L+ H ++ H AHYPO_005465-RA 225 VCLQCNMRFASVTALVEHVKKvH 247 69******************999 PP
2	zf-C2H2	16.5	2.5e-05	263	285	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ L+ H + H AHYPO_005465-RA 263 VCPKCSRGFKDPVALVDHVEKdH 285 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	3.66E-13	7	51	No hit	No description
Gene3D	G3DSA:4.10.1110.10	8.0E-11	10	52	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	7.734	10	56	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.0E-12	13	50	IPR000058	Zinc finger, AN1-type
SMART	SM00154	1.3E-4	13	52	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	3.14E-8	90	142	No hit	No description
Gene3D	G3DSA:4.10.1110.10	3.2E-10	90	145	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	7.641	98	146	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.5E-7	101	140	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.22	101	142	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.034	224	247	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.787	224	252	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	226	247	IPR007087	Zinc finger, C2H2
SMART	SM00355	8.3	262	285	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	264	285	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGTPAFPNLG KHCSVDDCKQ IDFLPFTCDR CNQVFCLEHR SYKQHQCPHA NHQGVTVVIC 60 PLCAKGVRLI PDEDPNISWE SHINTVCDPS NYEKVTKKRK CPVVGCKEIL VFSNTIKCKD 120 CTTDHCLKHR FGPDHKCDGP PKASTGIPFM GLLNSSSKKE VARPDRAPVQ ASSSMWSRFL 180 DAASSARASA EAGIAKLSND FNQALQVGQG SKSSTSTGGP GGQEVCLQCN MRFASVTALV 240 EHVKKVHERS NNRHSVKKLS IDVCPKCSRG FKDPVALVDH VEKDHGGTSR A*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021846550.1	1e-177	zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
Swissprot	Q0D5B9	1e-121	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q8VZ42	1e-121	SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBL	A0A0J8B7C5	1e-175	A0A0J8B7C5_BETVU; Uncharacterized protein
STRING	XP_010666757.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-115	C2H2 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_005465-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]