PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_005403-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 654aa    MW: 72431 Da    PI: 10.2472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_005403-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.5e-112255337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     +W t E++ll++av+++G+++W++Iar+++ +Rt 
  AHYPO_005403-RA 22 SWGTLEELLLACAVHRYGTNSWDSIARELQ-NRTT 55
                     7*****************************.9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.42E-71972IPR009057Homeodomain-like
SMARTSM007171.3E-51973IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-62161IPR009057Homeodomain-like
PROSITE profilePS500906.3422171IPR017877Myb-like domain
PfamPF002491.4E-92264IPR001005SANT/Myb domain
CDDcd001672.85E-62771No hitNo description
SMARTSM002979.7E-10283404IPR001487Bromodomain
PfamPF004391.1E-9327388IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.2E-15329417IPR001487Bromodomain
SuperFamilySSF473705.1E-16329405IPR001487Bromodomain
PROSITE profilePS5001412.319332385IPR001487Bromodomain
CDDcd043692.66E-15332399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAEPSTSPDQ NTTAITTTTS SSWGTLEELL LACAVHRYGT NSWDSIAREL QNRTTFSLTP  60
HICQQKYRDI KRRFSSDEKS AGDSNHCLDE LRRLRVAELR RELQRYDLSI VSLQLKVKKL  120
KEDRGKNVKD DIKDEVDLQK TQEKETEMIM NKVKAEPPGQ SEPEPVEPVN VEPDQNPEPE  180
NNSCNGSSNS KEKRAGQQER KKRVNSDELV ESVAESKDDV GCGGGEREEA GTKENSDVQS  240
TASLWRNENN NENKNIDRGK KGGGLSGTSS GDENQSPAIK SNSDVKSQPL IEFLEVVLAR  300
KLGSFFERRL ESQRILFGVN KCGSLSQTQE SPKYKNLIRQ HIDLGTIQRR LEEGQYTDCH  360
TKFYRDVMLL INNALIFFSR KTTEHKAALE LRQLLDKQFR PHVSSPHDHK SNPSKPIQLV  420
PIPKPTKSEA KQVDLKPKLT ITGPIIACRK RSSIAGKSSQ GGEKKDSSSA TPLIDKDLIP  480
LGELMKQQAE KTSSTSFNAV TKKRSRDGSF GSRSSSSKND NSNPSPNTPV LSKGESTEAK  540
ADKKKPGPGT SSSKMKQGSG SGKLLLLESL KNSDKKKTSN DNNGSNAKTD KRKDEGTQSK  600
IGKEKTKGKE ERQSPGNRSS RRPPKRAAAI AAMGKRGRDN GGEEPQPKKR QRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770379.10.0uncharacterized protein LOC110734522 isoform X1
TrEMBLA0A0K9RLA50.0A0A0K9RLA5_SPIOL; Uncharacterized protein
STRINGXP_010672669.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-57DNA-binding bromodomain-containing protein