PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_005288-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | WRKY | ||||||||
Protein Properties | Length: 136aa MW: 15393.2 Da PI: 8.8479 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 23.7 | 9.9e-08 | 90 | 113 | 36 | 59 |
EEEEE-SSSTTEEEEEEES--SS- CS WRKY 36 kkversaedpkvveitYegeHnhe 59 k+v+r ++d ++v++tYeg Hnh+ AHYPO_005288-RA 90 KQVQRLSKDSSIVVTTYEGVHNHP 113 9**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.8E-8 | 64 | 88 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-13 | 70 | 114 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.507 | 71 | 115 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-11 | 76 | 114 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.7E-6 | 90 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-4 | 90 | 113 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MNSPSVIDDE VHQESNSCCD DLGNNNGGNN ENIINKKENN MKKIVGNNNK NNNWRSRKGL 60 MIPRFAFKTK SSEDILDDGY RWRKYGQKSK QVQRLSKDSS IVVTTYEGVH NHPCEKLMEA 120 LSPLLSQMQF LSSLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849039.1 | 5e-44 | probable WRKY transcription factor 75 | ||||
Swissprot | Q9FFS3 | 2e-35 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A371F1I4 | 3e-39 | A0A371F1I4_MUCPR; Putative WRKY transcription factor 24 (Fragment) | ||||
STRING | XP_010669789.1 | 2e-39 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 3e-37 | WRKY DNA-binding protein 24 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_005288-RA |