PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AHYPO_005128-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 8939.35 Da PI: 10.6551 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n++ rqvtfskRr g+lKKA ELS+LCdaev v+ifsst klye++s AHYPO_005128-RA 9 ERIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVVIFSSTRKLYEFAS 59 69***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.936 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.28E-40 | 2 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 78 aa Download sequence Send to blast |
MGRGKIVIER IDNSTSRQVT FSKRRSGLLK KARELSILCD AEVGVVIFSS TRKLYEFAST 60 NMKSVIERYN KMKEENGH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-23 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 1e-23 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 1e-23 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 1e-23 | 1 | 76 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021717229.1 | 4e-44 | MADS-box transcription factor 23-like isoform X2 | ||||
Refseq | XP_021717230.1 | 9e-45 | MADS-box transcription factor ANR1-like isoform X3 | ||||
Swissprot | Q6Z6W2 | 1e-38 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A4D8Y3K7 | 1e-40 | A0A4D8Y3K7_SALSN; MADS-box transcription factor, plant | ||||
STRING | XP_010691452.1 | 3e-40 | (Beta vulgaris) | ||||
STRING | XP_002518331.1 | 8e-40 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14210.1 | 2e-40 | AGAMOUS-like 44 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AHYPO_005128-RA |
Publications ? help Back to Top | |||
---|---|---|---|
|