PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_005119-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 24765.8 Da PI: 7.7375 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.2 | 6.6e-06 | 8 | 27 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H+r AHYPO_005119-RA 8 PCTECGKTFTSWKALFGHMR 27 5******************8 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00058 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H AHYPO_005119-RA 78 FECSSCKKTFTSHQALGGHRASH 100 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.159 | 7 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.46E-9 | 8 | 29 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-5 | 9 | 29 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.9E-9 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.46E-9 | 73 | 100 | No hit | No description |
SMART | SM00355 | 0.21 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-9 | 78 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.04E-5 | 146 | 173 | No hit | No description |
Pfam | PF13912 | 5.9E-12 | 146 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.037 | 147 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 147 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 149 | 169 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MATEPIPPCT ECGKTFTSWK ALFGHMRCHP EREWRGINPP PHLRRQPLAT STTSDDREVA 60 ASLLLLAGGP VSSDAAKFEC SSCKKTFTSH QALGGHRASH KNVKGCFAIT KNNVEDDHCM 120 GTQTSTQDDA TGLQLSLGLG QGVQTAHKCT ICFKLFPTGQ ALGGHMRCHW EKNEASTSSI 180 GPNIGPSVMP GSQPSKAQNN LDLNVHPQVK DDGSSSSNDS SSMQLELRLG L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021724918.1 | 3e-83 | zinc finger protein ZAT3-like | ||||
Refseq | XP_021724919.1 | 3e-83 | zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 5e-67 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A0K9R027 | 5e-75 | A0A0K9R027_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690656.1 | 3e-79 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-63 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_005119-RA |