PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_005035-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 353aa MW: 41162.8 Da PI: 8.3623

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_005035-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.3e-21	59	142	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHnH l AHYPO_005035-RA 59 NYYGCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRILEVTLEHNHLL 142 5899*************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-18	59	142	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.089	234	270	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.0E-5	244	267	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-6	245	272	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEEESRNIGQ VPDIDGSITL GSDNDRAESD AQNTSTNGRK EFVAPSIGME FESYDDAYNY 60 YGCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMIR 120 MRLVDSKRWR ILEVTLEHNH LLGFKMYKAI KTVDVDSKKK PSNSNAEGQT IKLYKAVQLS 180 KIYTKDIFKK FQLEVEEMYS CFSTTQIHVD GPYIIFLVKE RLIVEGSKRE IRDYEVYYNR 240 ASAEVRCICS CFNFNGYLCR HALCVLNYNG VEEIPAKYIL SRWKKDYKRL YVLDNNTNVV 300 DINDRIQWFD QLYQSSLRVI EEGVVSLDHY RSALQAFEES LNRVYNVEEK HE*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEEESRNIGQ VPDIDGSITL GSDNDRAESD AQNTSTNGRK EFVAPSIGME FESYDDAYNY  60
YGCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMIR  120
MRLVDSKRWR ILEVTLEHNH LLGFKMYKAI KTVDVDSKKK PSNSNAEGQT IKLYKAVQLS  180
KIYTKDIFKK FQLEVEEMYS CFSTTQIHVD GPYIIFLVKE RLIVEGSKRE IRDYEVYYNR  240
ASAEVRCICS CFNFNGYLCR HALCVLNYNG VEEIPAKYIL SRWKKDYKRL YVLDNNTNVV  300
DINDRIQWFD QLYQSSLRVI EEGVVSLDHY RSALQAFEES LNRVYNVEEK HE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691105.1	1e-104	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	4e-87	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A444ZDH7	1e-165	A0A444ZDH7_ARAHY; Uncharacterized protein
STRING	XP_010691105.1	1e-103	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	2e-89	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	AHYPO_005035-RA

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]