PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_004140-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

LSD

Protein Properties

Length: 304aa MW: 35193.4 Da PI: 4.183

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_004140-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.6	1.8e-12	214	238	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP+G+++V C++C tV AHYPO_004140-RA 214 CGSCRRLLSYPLGSKHVECSCCKTV 238 ************************9 PP
2	zf-LSD1	34.3	3.8e-11	252	276	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++Cr+lL+YP+GA sVRC +C V AHYPO_004140-RA 252 CENCRVLLMYPYGAVSVRCCSCSSV 276 **********************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.5E-15	211	241	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.2E-10	214	238	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.0E-8	249	276	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.7E-9	252	276	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MEEENSSITE ANQESTSPQP LEESKSEEQK EAVLLCKQQE EVEEREINSV IDNEQVEIED 60 EKEKKSTEEE EDKMVEKEKK LMEEKMVKGK TKSMDEEEEM KEKEKKLMEE EMVEGETESM 120 NEEEVMEEKE KKLMEEEKEI VEREKKSGEE EKEMVELKEK LMEEEKKKGA EEDNDDRESV 180 KMEEIDEEEE VDGPPPGWEF PPSSSLPERG QMVCGSCRRL LSYPLGSKHV ECSCCKTVNY 240 VLEEHQVGQV KCENCRVLLM YPYGAVSVRC CSCSSVIYIG DHNRRPPLSV QQSQAFRPFG 300 VML*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9RGW5	5e-61	A0A0K9RGW5_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	8e-32	lsd one like 2

Link Out ? help Back to Top
Phytozome	AHYPO_004140-RA