PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003771-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 377aa    MW: 43168.6 Da    PI: 7.2092
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003771-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05215234120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C++C+k+F+r  n++ H+
  AHYPO_003771-RA 215 FACSICSKTFNRYNNMQMHM 234
                      78*****************9 PP
2zf-C2H214.97.7e-05299321123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  k + ++H +++
  AHYPO_003771-RA 299 FMCRKCGKAFAVKGDWRTHEKNC 321
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-5211238No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5215234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741215242IPR007087Zinc finger, C2H2
SMARTSM003550.17215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SMARTSM00355240262294IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.72E-5284319No hitNo description
Gene3DG3DSA:3.30.160.603.1E-4295319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035550299319IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDLCCEAPNL IEWLKLSPPL DSSSSISPII SSSFSSYDHS NKSKNSMMLK MKLPNFYYKP  60
HQDHDHDHDQ NRAAKTTLPL LSRLCEGKDI KEEEGNNGIY KEEDINDHQL EKVTFALHIG  120
LPNSNIISNT NYNEELLSTN NHDDHDDHDV VEGKKHHLKI EKEKDDHSIM MMINDDNDDK  180
EKISMIDQNY SSSLNSESRF WIPTQAQILI GPMQFACSIC SKTFNRYNNM QMHMWGHGSE  240
YRKGPESLRG TQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHF KRKHGIKAFM  300
CRKCGKAFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH SPHPSLEGFE  360
EDKECVTSTT ASSEDE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686027.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-115ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0K9RYT41e-143A0A0K9RYT4_SPIOL; Uncharacterized protein
STRINGXP_010686027.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-112WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]