PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003297-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 191aa    MW: 21916.6 Da    PI: 10.5233
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003297-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.2e-1082166190
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f  vl ps+v ++  l++p     +h + + +  +++l+    ++W  ++ + +k g+  l++GWk F+ +n L+e D++vFk ++r+++
  AHYPO_003297-RA  82 FTVVLPPSSVYRRFFLTVPAAWQIKHRLRNLQ--EVILRV-GEKTWHTTFVFYGKIGG--LSAGWKTFALDNFLEEFDVLVFKPVSRTDE 166
                      6788999**************99999887544..677665.88*******99888888..9**********************8766444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1477176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1379176IPR015300DNA-binding pseudobarrel domain
CDDcd100178.38E-1381176No hitNo description
SMARTSM010196.7E-482178IPR003340B3 DNA binding domain
PROSITE profilePS508639.95382178IPR003340B3 DNA binding domain
PfamPF023629.0E-882166IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MACSREKSFH TPRAYRRQLS AKEIHPRLSP GKCGRRKMIL SRSALIAFSL PKEYKSTRRA  60
VTEKEKEDAL LSALHEQTDA SFTVVLPPSS VYRRFFLTVP AAWQIKHRLR NLQEVILRVG  120
EKTWHTTFVF YGKIGGLSAG WKTFALDNFL EEFDVLVFKP VSRTDEVVMM DVAIFRVVST  180
ISFLLPIVYY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021742083.12e-45uncharacterized protein LOC110708294
TrEMBLA0A0K9QIC16e-42A0A0K9QIC1_SPIOL; Uncharacterized protein
STRINGXP_010675171.11e-42(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-18B3 family protein