PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002953-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 263aa    MW: 29191.7 Da    PI: 5.9846
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002953-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.7e-151455146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg WT+eEd +l  +++q+G+++W +    ++ gRt++++k++w++
  AHYPO_002953-RA 14 RGQWTPEEDNKLSSYIAQHGTRNWPA---QLP-GRTDNDVKNHWNT 55
                     89**********************88...***.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-14265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-19562IPR009057Homeodomain-like
PROSITE profilePS5129422.496961IPR017930Myb domain
SMARTSM007173.8E-101359IPR001005SANT/Myb domain
PfamPF002495.3E-131455IPR001005SANT/Myb domain
CDDcd001673.42E-121757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRIPCCEKE NVKRGQWTPE EDNKLSSYIA QHGTRNWPAQ LPGRTDNDVK NHWNTKLKKK  60
LTGMGIDPVT HKSFSHLMAE IATTLGPPQV ANLTEAALGC FKDEMLHLLT KKRIDFQLQP  120
TNSQGNNMNP TYIMNTKPEA KEDYVEKIKL GLSKAIQQSD HMMMSNNPWE HNVGIAATSA  180
QVNPFSGFQY GHSAFGAEED GSPWNQSMCS TAGDQLGHLK LEDENGEESQ GGKDIRNGNN  240
IFSTDSLLWD LPSDHDLMNP IV*
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676132.11e-146PREDICTED: transcription factor MYB80
SwissprotQ7XQN14e-47MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A0K9RF511e-123A0A0K9RF51_SPIOL; Uncharacterized protein
STRINGXP_010676132.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.13e-47myb domain protein 103