PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002935-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 382aa    MW: 42192.3 Da    PI: 4.5611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002935-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19125174255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  AHYPO_002935-RA 125 KYRGVRQRP-WGKWAAEIRDPA----RrIRLWLGTYDTAEEAAMVYDNAAIRLRG 174
                      8********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-30124182IPR001471AP2/ERF domain
PROSITE profilePS5103224.223125182IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21125182IPR016177DNA-binding domain
CDDcd000181.66E-33125182No hitNo description
PfamPF008471.0E-12125174IPR001471AP2/ERF domain
SMARTSM003809.4E-39125188IPR001471AP2/ERF domain
PRINTSPR003671.9E-10126137IPR001471AP2/ERF domain
PRINTSPR003671.9E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDYADIFCPV KYTEHRSVTK KHHKVSKKVS GTRSGVPRVV RVSMVDNDAT DSSSDDEEHA  60
LFGRQRVRRY LNEIIIEPTT TATATVGGLV TKNNKKSSTR KKSSGTAASA AANGGALGSS  120
GGVRKYRGVR QRPWGKWAAE IRDPARRIRL WLGTYDTAEE AAMVYDNAAI RLRGPDALTN  180
FATPPPREEV APVVVESHAP STSGGYESGD ESASHNVLCS PTSVLNFRGS TEEEVSRFKP  240
EDNEKENESF GTVQEMGNSS SCTTTTSNYS YFEECQGESS SIDFLDTPFL NDFFNFETPE  300
PMIFDESKPQ ENDCHMFSPE FGFGDISHML LDSYMTDFDF DFDIDFNAMN NDTHSSSNLL  360
QVDDYFQDVN DIIASDPLVA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22124181159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764936.11e-142ethylene-responsive transcription factor CRF4-like
TrEMBLA0A0K9QW281e-131A0A0K9QW28_SPIOL; Uncharacterized protein
STRINGXP_010671529.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-51cytokinin response factor 4