PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002791-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 440aa    MW: 47713.6 Da    PI: 10.1232
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002791-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.51.1e-1581168186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      +++ ++ +qCk++++ ++k+yk +k+  +++ ++ s ++p+f++l+
  AHYPO_002791-RA  81 CWSEGATSVLINAWGERYMELSRGNLKQKHWREVADIVssreDYTKVPKTDIQCKNRIDTVKKKYKTEKAKIENG-CGPS-RWPFFERLD 168
                      7*************************************86555556677889*********************98.6665.8******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2679170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDEDEEIQSH PSSGSESDPP PLPQPLPSNQ ITAVTVAAVP PNSKSPSTPS SLTLALPIQP  60
MSRLSSVGGF SGSGGGGRED CWSEGATSVL INAWGERYME LSRGNLKQKH WREVADIVSS  120
REDYTKVPKT DIQCKNRIDT VKKKYKTEKA KIENGCGPSR WPFFERLDRL IGPAAMTTTP  180
NASKGFRSST VSVAGVTVSP QTGNASTGGL KSVPVGIPVG VRQPAPLPFS PPSYLQTPQQ  240
QHQELMQKRK NVEMNKGVGG GGEKRGKTVD KEDWSHDSGD SLPPERTVFE MRKQKNMEMN  300
KGGGGGEKRG KAKKREKKEA VKAWGNSVRE LTQAILKFGE AYEAAESKKL QHIVEMEMQR  360
MKFAKELELQ RMKFMTKTQI ELSQLNGNGN VNVNMNVNGN ASNNSDSRGG RSGGVGGGEI  420
NNRHLHGNHL NHANSDSSN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851201.11e-126trihelix transcription factor ASIL2-like
TrEMBLA0A0K9Q9Q41e-125A0A0K9Q9Q4_SPIOL; Uncharacterized protein
STRINGXP_009770839.13e-99(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-75sequence-specific DNA binding transcription factors