PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002439-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 448aa    MW: 50806.4 Da    PI: 5.8559
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002439-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.81.1e-21125221185
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                      +Wt++ v++Li+++ +++++   ++           +kk++W+ vsk m + g+ +sp+qC++k+++lnkrykk++++ +++ ++++++t ++ 
  AHYPO_002439-RA 125 KWTDNAVRLLIAVVASVGDDGMFEAkdglkrkagmlQKKGKWKMVSKIMISNGCCVSPQQCEDKFNDLNKRYKKLNDILGRGtSCQVVETPSLM 218
                      7**************999999865446777888999**********************************************669999999999 PP

         trihelix  83 dql 85 
                      d++
  AHYPO_002439-RA 219 DSM 221
                      888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-19123248No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDRSSLGGGF LSGSNRLLDM EMSVDKLQQG HMGQSLMTHE SLELNPINMM SGIENEQSLG  60
FLEAKGLSLK GMSMDFGKGK GISLGFSPSN HTTSEDEEPS FTEDMNGENC NSSKDRKESP  120
WQRMKWTDNA VRLLIAVVAS VGDDGMFEAK DGLKRKAGML QKKGKWKMVS KIMISNGCCV  180
SPQQCEDKFN DLNKRYKKLN DILGRGTSCQ VVETPSLMDS MPHLTEKAKN EVKKILNSKH  240
LFYREMCAFH NGQRIPDCHD IDLQAHLIPL APQENENNIS EAQEGDENDE SESDDSFENN  300
ENDNETKPGI VEGISGRTCI NGGNSNFSLF PSRQDCNRWE PESMYQDVAK SPAERRAWIQ  360
HQLWQAEVQK VRLQAETLNL EKERLKWLRF RSKKDRELER LRLENERMKL ENDRMVMLLK  420
QKEIACGMQK PESLLNPSSH SIERLHG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673612.10.0PREDICTED: uncharacterized protein LOC104889964
TrEMBLA0A0K9RLX40.0A0A0K9RLX4_SPIOL; Uncharacterized protein
STRINGXP_010673612.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-70sequence-specific DNA binding transcription factors