PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_002392-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

CAMTA

Protein Properties

Length: 990aa MW: 110234 Da PI: 5.3877

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_002392-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.5	9.8e-57	21	136	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 + ++rwl++ ei++iL n+ k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n+ fqr AHYPO_002392-RA 21 EAQHRWLRPAEICEILRNYPKFQISSEPPNRPSSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNEFFQR 114 349***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlLeee+ +iv+vhylevk AHYPO_002392-RA 115 RSYWLLEEEFMHIVFVHYLEVK 136 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.659	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-80	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.4E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.4E-7	419	508	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.04E-16	422	507	IPR014756	Immunoglobulin E-set
CDD	cd00102	9.49E-4	422	508	No hit	No description
Pfam	PF01833	1.4E-7	422	507	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.9E-14	579	700	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	12.673	592	707	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.27E-9	592	695	No hit	No description
SuperFamily	SSF48403	1.9E-13	594	700	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF52540	3.72E-8	802	855	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.027	804	826	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	805	834	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.4E-4	806	825	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	827	849	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	828	852	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	6.4E-5	831	849	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MADRGSINPG IRLDIQQLQL EAQHRWLRPA EICEILRNYP KFQISSEPPN RPSSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEDNE FFQRRSYWLL 120 EEEFMHIVFV HYLEVKGNRN NVRGTEPVIS TSQISNSMSS SVSNSYNDAF TGNAGSPSAV 180 SSLTSSYDDF ESEDNHQAMS KYPSLNFSPV EDRYENNKMG PLLSSNYLQA FPEEYNGVQP 240 LDYVSLVQQD LGTNDDNQFK TLDLASWEEV FQQSTRGPGN LQVNPLISAA PLVGSTGDYN 300 ENISQFSDAG LGFNAVAGGS LTPYIPSINP LELSSTEFQD NTNVSCTAKQ PLLGNIIAGE 360 GLQKVDSFSK WMSKELAGVD LDLKPSSEFS WIVSTASVDD PSEPGEDYSM SPSIGQDQLF 420 DIQDFSPSCS STDTETKVVI TGKFLVSPSE VSKYNWSCMF GEVEVPALVL GNGVLCCRAP 480 LHKAGRVPFY VTCSNRFACS QLREFEYIVD SEKAKSMNVS GNSMTEEQLW IRLHELLSLK 540 SPGNFNSTSE SFRKKEPVFK KILLSMEDEL CLGVEQQLKE KVVSWLFDKV NEDGKGPNVL 600 DEKGQGLIHL AAALGLDWII PPTVAAGVSV NFRDICGWTA LHWAAFCGRE TSVALLVALE 660 AASGAVTDPS PEFPLGRTAA DLASANGFKG ISGFLAEHSL TAHLETLTMT EDSISKAVQT 720 MREKVATPGN EGDGSDLSLK DSLAAVRNAT QAAGRIHQVF RMQSFQRKHV SKGGAPADDD 780 LFNDEQFLSL LSSKIQRPGH PDEQAHSAAV RIQKKFRGYK KRKEFLIIRE RVVKIQAHVR 840 GHQVRKRYKT VVWSVGILEK VILRWRRRGT GLRGFRPDAL NKASSTQEAQ DVQKNPSEDD 900 DYDYLKEGRK QTEERLQKAL VRVKSMVQYP EGRAQYRRLL TAVEGFQKNQ QVHGSVLDSS 960 EDLPVEGEED MIDVESLLDD DNFMAIAFE*

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MADRGSINPG IRLDIQQLQL EAQHRWLRPA EICEILRNYP KFQISSEPPN RPSSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEDNE FFQRRSYWLL  120
EEEFMHIVFV HYLEVKGNRN NVRGTEPVIS TSQISNSMSS SVSNSYNDAF TGNAGSPSAV  180
SSLTSSYDDF ESEDNHQAMS KYPSLNFSPV EDRYENNKMG PLLSSNYLQA FPEEYNGVQP  240
LDYVSLVQQD LGTNDDNQFK TLDLASWEEV FQQSTRGPGN LQVNPLISAA PLVGSTGDYN  300
ENISQFSDAG LGFNAVAGGS LTPYIPSINP LELSSTEFQD NTNVSCTAKQ PLLGNIIAGE  360
GLQKVDSFSK WMSKELAGVD LDLKPSSEFS WIVSTASVDD PSEPGEDYSM SPSIGQDQLF  420
DIQDFSPSCS STDTETKVVI TGKFLVSPSE VSKYNWSCMF GEVEVPALVL GNGVLCCRAP  480
LHKAGRVPFY VTCSNRFACS QLREFEYIVD SEKAKSMNVS GNSMTEEQLW IRLHELLSLK  540
SPGNFNSTSE SFRKKEPVFK KILLSMEDEL CLGVEQQLKE KVVSWLFDKV NEDGKGPNVL  600
DEKGQGLIHL AAALGLDWII PPTVAAGVSV NFRDICGWTA LHWAAFCGRE TSVALLVALE  660
AASGAVTDPS PEFPLGRTAA DLASANGFKG ISGFLAEHSL TAHLETLTMT EDSISKAVQT  720
MREKVATPGN EGDGSDLSLK DSLAAVRNAT QAAGRIHQVF RMQSFQRKHV SKGGAPADDD  780
LFNDEQFLSL LSSKIQRPGH PDEQAHSAAV RIQKKFRGYK KRKEFLIIRE RVVKIQAHVR  840
GHQVRKRYKT VVWSVGILEK VILRWRRRGT GLRGFRPDAL NKASSTQEAQ DVQKNPSEDD  900
DYDYLKEGRK QTEERLQKAL VRVKSMVQYP EGRAQYRRLL TAVEGFQKNQ QVHGSVLDSS  960
EDLPVEGEED MIDVESLLDD DNFMAIAFE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690492.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A0K9QYQ2	0.0	A0A0K9QYQ2_SPIOL; Uncharacterized protein
STRING	XP_010690491.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.1	0.0	ethylene induced calmodulin binding protein

Link Out ? help Back to Top
Phytozome	AHYPO_002392-RA

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]