PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_002238-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | bHLH | ||||||||
Protein Properties | Length: 152aa MW: 17001.2 Da PI: 4.8161 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.1 | 4.8e-11 | 77 | 117 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq AHYPO_002238-RA 77 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 117 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.135 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-15 | 68 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-13 | 72 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-11 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-11 | 76 | 121 | No hit | No description |
Pfam | PF00010 | 2.4E-8 | 77 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
METNVEMGYG EDHQPAFSDT QLQLKQEYDQ ISEIEPGSED VKCNDSLSSK GTATINSNGK 60 TRASRGAATD PQSIYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAV QYVKFLQLQI 120 KLLSSDDLWM YAPLAYNGMD IGLDSKIRAL L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021852168.1 | 3e-63 | transcription factor bHLH54-like | ||||
Swissprot | Q7XHI9 | 2e-58 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A0K9RMZ1 | 6e-62 | A0A0K9RMZ1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687357.1 | 2e-60 | (Beta vulgaris) | ||||
STRING | XP_002527508.1 | 1e-60 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_002238-RA |