PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_002203-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 530aa    MW: 60556.9 Da    PI: 9.7451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_002203-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09473519347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                       W+   +  lv+a k ++++   +W++Ia+ ++ g+t +qck  + ++
  AHYPO_002203-RA 473 VWSSVQERALVQALKTFPKEtpqRWERIAAAVP-GKTVNQCKKQFTSL 519
                      6********************************.********988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.79E-1258110IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1109.0E-1260112IPR001623DnaJ domain
SMARTSM002719.8E-762161IPR001623DnaJ domain
CDDcd062579.57E-963119IPR001623DnaJ domain
PfamPF002261.5E-963116IPR001623DnaJ domain
PROSITE profilePS5007611.9963136IPR001623DnaJ domain
Gene3DG3DSA:1.10.10.607.2E-5340389IPR009057Homeodomain-like
PROSITE profilePS500906.051342397IPR017877Myb-like domain
SMARTSM007171.0E-4346399IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-6346391IPR009057Homeodomain-like
CDDcd001670.00133350389No hitNo description
SMARTSM007179.2E-10470522IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-9472527IPR009057Homeodomain-like
PfamPF002493.7E-7473519IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-6473519IPR009057Homeodomain-like
PROSITE profilePS500907.201474520IPR017877Myb-like domain
CDDcd001671.12E-6474520No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
SRFEPAGLAF HAAALRLAGY SEEDSDRDDQ PVSSDKEQNY VPSFDSYSSK SKKKSGADGQ  60
QQDHYALLGL AHLRYLATED QIKKSYRDVA LKYHPDKQAA LLLSEETEAA KQVDKFYNFW  120
YSFKSWREFP HADEFDLEQA ESRDHRRWME RQNAKLSEKA RKEEYARVRL LVDNAYKRDP  180
RVARRKELEK AEKQRKKQAK FLAKKLQEEE AARAAEEEKR KKEEEERKAA EVALQNKKAK  240
EKEKKLLRKE RTRLRSLTAE VASKHEFNIS GDDVETLCMS LDMERLKNLC DKIEGKEKEE  300
QVKLLKESLS DQVNIEPDHK AEIKNSQQTS ALQSNGNMTS SRNEKKEKLW GKEEVDLLRK  360
GMQKYPKGTS RRWEVISEYI GTGRSVEEIL KATKTVLLQK PDNSRAFDSF LEKRKPAASI  420
ASPLSTRDEV QNVSSVNGPG TSPTSAPDLT NATSSSSSNE QGSVAASVSD QDVWSSVQER  480
ALVQALKTFP KETPQRWERI AAAVPGKTVN QCKKQFTSLK EILRSKKNTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A068U0Y80.0A0A068U0Y8_COFCA; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-114DnaJ domain ;Myb-like DNA-binding domain