PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001855-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91900 Da    PI: 6.4186
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001855-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-183289457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  AHYPO_001855-RA 32 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 89
                     5789****************************************************97 PP
2START160.61.2e-501683722204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d+  W +++++ e+    s g  g+++l
  AHYPO_001855-RA 168 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCSGVAARACGLVSLEPT-KIAEILKDRTSWFRDCRSLEVFTMFSAGngGTIEL 260
                      7899******************************************************.7777777777****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                      ++++ +a+++l+p Rdf+++Ry+ +l+ g+ v++++S++   +++ +++++Ra +lpSg+li+p+++g+s +++v+h +l++++++++lr+l++
  AHYPO_001855-RA 261 IYTQIYAPTTLAPaRDFWTIRYTTTLENGSIVVCERSLSGSGPNTATPQFIRADMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYQ 354
                      *******************************************999************************************************ PP

                      HHHHHHHHHHHHHTXXXX CS
            START 187 sglaegaktwvatlqrqc 204
                      s+ + ++k++ a+l++ +
  AHYPO_001855-RA 355 SSKVVAQKMTIAALRYIR 372
                      *************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-19889IPR009057Homeodomain-like
PROSITE profilePS5007115.6452690IPR001356Homeobox domain
SMARTSM003891.5E-152894IPR001356Homeobox domain
SuperFamilySSF466895.56E-162992IPR009057Homeodomain-like
CDDcd000863.59E-163191No hitNo description
PfamPF000467.5E-163289IPR001356Homeobox domain
CDDcd146861.45E-683122No hitNo description
PROSITE profilePS5084826.662158383IPR002913START domain
CDDcd088752.11E-70162375No hitNo description
SMARTSM002349.3E-41167374IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-19167355IPR023393START-like domain
SuperFamilySSF559615.77E-34167376No hitNo description
PfamPF018522.4E-48168372IPR002913START domain
PfamPF086704.5E-49695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAMVAHRETS SGSGSSGMLQ HMAAAANDTG KYVRYTAEQV EALERVYAEC PKPSSLRRQQ  60
LIRECPILSN IEPKQIKVWF QNRRCREKQK KESSRLQTVN RKLTAMNKLL MEENDRLQKQ  120
VSQLVCENGF MRQQLQTAPI VDGNSEPVVT TPQHSNRDAN NPAGLLSIAE ETLAEFLSKA  180
TGTAVDWVQM PGMKPGPDSV GIFAISHRCS GVAARACGLV SLEPTKIAEI LKDRTSWFRD  240
CRSLEVFTMF SAGNGGTIEL IYTQIYAPTT LAPARDFWTI RYTTTLENGS IVVCERSLSG  300
SGPNTATPQF IRADMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYQSSKVVA  360
QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FTDDGWTLLN  420
CDSAEDVIIA CNTTKTFMAT LSAATSLPLI GGVLCAKASM LLQNVPAAVL VRFLREHRSE  480
WADFNVDAYA AAALKANFFA FPGMRATRFT GSQIIMPLGH TIENEEMLEV IRLEGHSLTP  540
GDAFISRDIH LLQICSGIDE NSVGACSELV FAPIDEMFPD DGPLLSSGFR VIPLDSKPET  600
ATNRTLDLTS SLEVGPSTNH GNGDASSSGS TRSVLTIAFQ FPYESSLQEN VATMARQYVR  660
SVISSVQRVA VAISPLGLNP TVSPKLSPGS PEALTLAHWI CQSYSYHMGA ELLRTSVAHD  720
TVLKLLWHHQ DAIICCSIKF PPVFIFANQA GLDMLETTLV ALQDVTLDKI FDESGRKSLC  780
ADFSRIMEQG YSCLPSGVCM STMGRHVSYE QAIAWKVFAA EETAIHCLAF TFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689538.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A0K9QZ930.0A0A0K9QZ93_SPIOL; Uncharacterized protein
STRINGXP_010689538.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]