PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001810-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 585aa MW: 67762.5 Da PI: 7.7563

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001810-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.4	2.8e-24	67	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke +w+v+++++ HnHel AHYPO_001810-RA 67 DYYSSFARKNGFSIRKARSTESHNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEVingVTQWYVSQFSNVHNHELL 158 59******************7777.***************************************99866789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-22	67	158	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.076	467	504	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.5E-9	476	504	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-5	479	506	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MKHKSNIWIQ KEQCPCGDWK CFIKYEGEEQ GQACQPSQNG SSSSSSSAVV FAPYVGQIFV 60 SDFEAFDYYS SFARKNGFSI RKARSTESHN LGVYRRDFVC YRSGFNQPRK KANVEHPRER 120 KSVRCGCDAK LYLTKEVING VTQWYVSQFS NVHNHELLED DQVRMLPAYR KIQEGDQERI 180 LLLSKAGFPV NRIISILELE KGVQPGQLPF IEKDIRNFVR TCKKNVQESD VLLTEKRETD 240 MVELLEACKA KAGRDGDFTI VTDLDPGLRD IIASELPNTK HVISLWYIMS KLNSWFSLAL 300 GPNMSDFRSH FEMVCYVESI EDFEHHWSHL VTRFGLGSDK HISLLSSCRA CWAFSYTRDS 360 FVARITTAEY MRCLNGFLKD ILNEQTCLQV FFEQVGRSAN LGYGVKEKIR YIRLKTCMPI 420 EEHAQSILTP YAFNVFQHEL VLTMQYAILE MEKGSYVVRH YKKIEGERVL LWIPEDEQIH 480 CSCKGFEHSG IPCRHALRLF VAKNYFQLPE KYFPFRWRMK SSLMPTDQEH KHGCYHALRS 540 LTDTLTTESL VSKERFHYVH KELTTLLDRV KDMPVDEGAT EMLN*

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MKHKSNIWIQ KEQCPCGDWK CFIKYEGEEQ GQACQPSQNG SSSSSSSAVV FAPYVGQIFV  60
SDFEAFDYYS SFARKNGFSI RKARSTESHN LGVYRRDFVC YRSGFNQPRK KANVEHPRER  120
KSVRCGCDAK LYLTKEVING VTQWYVSQFS NVHNHELLED DQVRMLPAYR KIQEGDQERI  180
LLLSKAGFPV NRIISILELE KGVQPGQLPF IEKDIRNFVR TCKKNVQESD VLLTEKRETD  240
MVELLEACKA KAGRDGDFTI VTDLDPGLRD IIASELPNTK HVISLWYIMS KLNSWFSLAL  300
GPNMSDFRSH FEMVCYVESI EDFEHHWSHL VTRFGLGSDK HISLLSSCRA CWAFSYTRDS  360
FVARITTAEY MRCLNGFLKD ILNEQTCLQV FFEQVGRSAN LGYGVKEKIR YIRLKTCMPI  420
EEHAQSILTP YAFNVFQHEL VLTMQYAILE MEKGSYVVRH YKKIEGERVL LWIPEDEQIH  480
CSCKGFEHSG IPCRHALRLF VAKNYFQLPE KYFPFRWRMK SSLMPTDQEH KHGCYHALRS  540
LTDTLTTESL VSKERFHYVH KELTTLLDRV KDMPVDEGAT EMLN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001331635.1	0.0	FAR1-related sequence 10
Swissprot	Q9LKR4	1e-135	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	B9SW49	0.0	B9SW49_RICCO; Uncharacterized protein
STRING	XP_002530218.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-136	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	AHYPO_001810-RA

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]