PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001686-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 696aa    MW: 79790.8 Da    PI: 8.1023
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001686-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.67.7e-2278171190
             FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      +fY+eYAk++GFs+r+++++ +    +  t+r fvC + g++  +  +++k rr+r+++r+gC+a l+++k++    ++w+vt ++++HnHel 
  AHYPO_001686-RA  78 EFYSEYAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKVASENKPRRNRKSSRCGCQAYLRISKTTelgLSEWRVTGFVNHHNHELL 171
                      6**************9998877356667999***************999**********************9977779**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1878171IPR004330FAR1 DNA binding domain
PfamPF105511.1E-19294385IPR018289MULE transposase domain
PROSITE profilePS509669.52569605IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-7575603IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-6580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSVISLLELG CEKNLMSNQE TRHSMVVFDE HSDHRSLSLD DSSSADDSPN DNRLSLEHTN  60
DSVPYIGQRF TSHDAAYEFY SEYAKRCGFS IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP  120
VKVASENKPR RNRKSSRCGC QAYLRISKTT ELGLSEWRVT GFVNHHNHEL LEPNQVRFLP  180
AYRTLSDSDK SRIFMFAKTG ISVQQMMRLL ELEKCVEPGY LPFTEKDVRN LIQSFRKVDS  240
VEDSIDLLRM CRNIKEKDHN FRFEYTVDSN NNLENIAWSY ASSVEAYEMF GDAVVFDTTH  300
RLTAFDMPLG IWVGINNYGM PCFFGCVLMR EENLRSLSWA LKVFLGFMNG QAPQTILTDQ  360
NMCLKEAVAV EMPTSKHALC IWLIVAKFPS WFNAVLGERY NEWKAEFYRL YNLESIDEFE  420
LGWRDMVNSF GLHTNRHINN LFALRSFWAL SYLRSHFMAG LTTSGQSKSI NAFIQRFLSA  480
QTRLAHFVEQ VAVAVDFKDQ AGEQRTMQQN LQNICLKTGA PMESHAASIL TPFAFSKLQD  540
QLVLAAHYAS FEMEDGFLVR HHTKLQGGRK VHWNPREGII SCSCHQFEFS GILCRHALRV  600
LSTGNCFQIP ERYLPLRWCR VNSSATKLQC TLNDHGEKVQ RLQSMVSMLV SESSKSKERL  660
DLATEQVSIL LSRIKEQQVS SSLVRIDTVT HGNYR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682037.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0J8C3220.0A0A0J8C322_BETVU; Uncharacterized protein
STRINGXP_010682037.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]