PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001680-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 344aa    MW: 40119.8 Da    PI: 7.887
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001680-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18331161199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++lv+p+kf ++ +gk   + t+tl+ ++g  sW+vkl  + + ++++l++GW+eF +a  ++ +D+++Fk++g+s+f  +v++f++
  AHYPO_001680-RA  33 DFHSQLVIPRKFSDNVKGK--LQETVTLKAPNGtASWQVKL--TTSEDAMILKDGWSEFLNAFSIQMNDIMIFKYTGESCF--HVQIFDR 116
                      55678*******9877777..6679*****99989******..**************************************..*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2021115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.53423117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-2224115IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-1524115No hitNo description
SMARTSM010193.3E-1425117IPR003340B3 DNA binding domain
PfamPF023628.1E-1634116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-11228320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-11230308IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-12230320No hitNo description
SMARTSM010190.0095231322IPR003340B3 DNA binding domain
PfamPF023622.7E-7258307IPR003340B3 DNA binding domain
PROSITE profilePS508639.502263322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEDKCKECES WAHKMYWNHF KCMYFCQILE GHDFHSQLVI PRKFSDNVKG KLQETVTLKA  60
PNGTASWQVK LTTSEDAMIL KDGWSEFLNA FSIQMNDIMI FKYTGESCFH VQIFDRVNLC  120
EKESSYFIRK CDHSEPDRLH QDTKFVEQSP DEAMQEDFAS IPPNKRKGDT ISQPNVHSVD  180
DTGTANEKAR LRKPACTWEP VAYISRRRPV TEEEKNRAFQ MAKEELTEGS FLVVMRPTHV  240
YKSFFLYLMN YEKGPVRLNV KDRTWLTRLV FTSMRRGIIS SGWKEFSLDN CLEEFDVCVF  300
KLTNQKHESS VLNLDVSIFR VVSEAVTSIR VRPACSRNRK LSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1320532122142B3 domain-containing transcription factor VRN1
4i1k_B3e-1320532122142B3 domain-containing transcription factor VRN1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-50B3 family protein