PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001471-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 339aa    MW: 37149.3 Da    PI: 5.3601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001471-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.52.4e-072042273659
                      EEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  36 kkversaedpkvveitYegeHnhe 59 
                      +kvers +dp++v++tYeg+H+h+
  AHYPO_001471-RA 204 RKVERSYNDPSIVVTTYEGQHTHP 227
                      68*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-7189227IPR003657WRKY domain
SMARTSM007747.2E-6197228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-5204227IPR003657WRKY domain
PROSITE profilePS508119.075204229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEMKEALKIE TLKQKTSLIT TNNNKNHFFN ENNHPSSSSS SSTSLDFHVF EKICCSSSST  60
TSNNTGFMEL LGMQDLINVN PSLFDMMMMN GYGGNHDDGV FHSSLDPPAP DPTLPLPNSS  120
NVNLEASEGV NNNLPTTPNS SSISSASNEG LNDDQHLDDD EEEQKAKKQS TKAKKTNQKR  180
QREPRFAFMT KSEVDHLEDG YRWRKVERSY NDPSIVVTTY EGQHTHPCTV LPRGIISGSS  240
FGSGFSVGAT SPFALPIQMT NNQFQLNCVT TLIPQLNQFG NIPMQNTSNL SGVSPSCSLL  300
ASQEKNISRG ISAPLNATLL RDHGLLEDIL PSIMKKEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679416.11e-100PREDICTED: probable WRKY transcription factor 23
TrEMBLA0A0K9RLH12e-82A0A0K9RLH1_SPIOL; Uncharacterized protein
STRINGXP_010679416.11e-99(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.15e-22WRKY DNA-binding protein 23