PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001457-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 217aa    MW: 25189.3 Da    PI: 8.2038
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001457-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.75.1e-2849107259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK  kgs +p++YYrC+++ gC++kk+ver++ed ++++itY+++Hnh+
  AHYPO_001457-RA  49 SDSWSWRKYGQKLLKGSLHPKGYYRCSTTkGCSAKKQVERCKEDASFLIITYTSTHNHP 107
                      69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-2940109IPR003657WRKY domain
PROSITE profilePS5081128.36943109IPR003657WRKY domain
SuperFamilySSF1182903.01E-2544109IPR003657WRKY domain
SMARTSM007742.6E-3248108IPR003657WRKY domain
PfamPF031069.9E-2450107IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDVSSTTSTP QNHVSTKRKM EDEYIEKRVV RIKIEEKKDE QQKKVWIPSD SWSWRKYGQK  60
LLKGSLHPKG YYRCSTTKGC SAKKQVERCK EDASFLIITY TSTHNHPSPS NQKTSKKKAQ  120
LIAQTQIIEA HNRPMLNLHD QSYQGHFNLQ SPTNSPNEAN EKEKQDEEKP YLVLLDTYTP  180
FESQYEQSLV DYPHLKSLKV QEKCDFLDAI DDLDCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-1942110680Disease resistance protein RRS1
5w3x_D4e-1942110680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679393.15e-64PREDICTED: probable WRKY transcription factor 69
STRINGXP_010679393.12e-63(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-29WRKY DNA-binding protein 65