PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001331-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 1027aa    MW: 113158 Da    PI: 6.5096
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001331-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22109210199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  AHYPO_001331-RA 109 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIKARDLHDSVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RD 198
                      99*****************************954.4444.48************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  AHYPO_001331-RA 199 EKQHLLLGIRRA 210
                      89999****997 PP
2Auxin_resp119.13.6e-39235318183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldp rW+nS+Wr+L+
  AHYPO_001331-RA 235 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAFYgQQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPARWKNSQWRNLQ 318
                      79**********************************99********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.03E-42100238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-40101224IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-19108209No hitNo description
PfamPF023621.5E-20109210IPR003340B3 DNA binding domain
SMARTSM010198.7E-23109211IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702109211IPR003340B3 DNA binding domain
PfamPF065072.9E-34235318IPR010525Auxin response factor
PROSITE profilePS5174518.243903998IPR000270PB1 domain
SuperFamilySSF542779.42E-7933992No hitNo description
PfamPF023097.4E-6962999IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
MKPTVTTNSP NTNSSEGEKK TINPELWQAC AGPLVAASMK KDVDAQIPNY TNLPSKLLCL  60
LHNVTLHADP ETDEVYAQMT LQPVPSFDKE ALLRSDLSLK AHKPQTEFFC KTLTASDTST  120
HGGFSVPRRA AEKIFPPLDF SMQPPAQEIK ARDLHDSVWT FRHIYRGQPK RHLLTTGWSL  180
FVSGKRLFAG DSVLFIRDEK QHLLLGIRRA NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA  240
NNSPFTVFYN PRASPSEFVI PLAKYYKAFY GQQVSLGMRF RMMFETEESG TRRYMGTITG  300
ISDLDPARWK NSQWRNLQVG WDESTAGERR NRVSVWEIEP VTAPFFICPP PFLRPKRPRL  360
PGMPDDDSDV DNILKRSMPW LGDDPNAMAG MSLVQWMNMQ QNPSFANPMQ ANFLNTIPGS  420
TLPSLPASDL SRQLGLNAMQ IPPQNNIQFN GQRSPQSVQQ HEQIQKSSGV LNPLGSFIQS  480
HQLCDTQQPR QNLMNQTLSP TQGPSQLLQC QGGLVQNHNS IQQQSSLQNH QLLGSLPQQK  540
QQIPGSNQQP NLLQMQQVSD SQLQLQLLQR LQQQQSLLSQ QSALQQANHI NQLQEQQRPL  600
LDVSQSFSRS LSSPQMQDMP QAQMMSVPHP QIMAQQMNKS NSPTNFQFSQ TPQVPKLLQQ  660
QSGAMPELQS QASAAFNPIS NRPSTAASNS FTGAAAGGQS VLTDDIPSCS TSPSTNNGPS  720
AAQGTVNIRG QRINALGEGN NHCSNLLNPT VLDAMEGHNT FKELHQKVDV KPSVNISRVE  780
NQGHLIRQAY QSIPSSQIDY LDTSSATSVS ISQNDIISQS NLLSHPQSIL LADTGHDVDA  840
QADIRKSIHT GAVTNGQIGT PLVSDTVLTK NVPTLDKNYS NNVSSSCMLN YENSKDGQQE  900
LSSSMVTQSF GVPDVAFNSI DSAINDGSFM NRGTWGYEEL KQDLARMFGV EGQMEDRGRV  960
GWKLVYVDHE NDVLLVGDDP WEDFVNCVRC IKILSPQEVQ QMSLDGDFGN ASLQNQACSS  1020
SDGGNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1521333942388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744475.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0K9S0970.0A0A0K9S097_SPIOL; Auxin response factor
STRINGXP_010669598.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19