PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001190-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 315aa    MW: 34929.3 Da    PI: 7.7156
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001190-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.31.8e-17218251134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  AHYPO_001190-RA 218 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 251
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-701304IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.477212248IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-16212262IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-15216275No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14216249IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.09E-13217264No hitNo description
PfamPF003203.8E-15218251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSGTKMEEID CCNFFEQIDD LLECPNDDVE KGLVNNGIDV EYNEFPPVYW SENSPVFSAA  60
TSKSASDLSA ELFVPYEDIV PIEWVSMFMN DSFASGSLKE GQSTSSTKDY PRNQFQTSSP  120
ISVLESSSDF YKVNPLSTGY EKRARSKRPR PATFNPHAHF ISPTSSIPNA SFSDTEKFVE  180
SRPKKKTKIK VLPPTRGLSQ NQNENPNATP TSQSLRRCLH CEITKTPQWR AGPMGPKTLC  240
NACGVRYKSG RLFPEYRPAA SPTFVPSLHS NSHKKVLEMR TNNIVEQPLV TSSAPRSCQQ  300
PDLTPKPGVA PAFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683872.11e-145PREDICTED: GATA transcription factor 8
TrEMBLA0A0K9QV981e-110A0A0K9QV98_SPIOL; GATA transcription factor
STRINGXP_010683872.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-47GATA transcription factor 9