PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_001144-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 154aa MW: 18041.4 Da PI: 9.8156 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 52 | 94 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+++++++++ +G++ W++Iar+++ gRt++++k++w+++l AHYPO_001144-RA 52 ITPQEEQIILQLHQIWGNK-WAKIARRLP-GRTDNEIKNYWRTHL 94 59*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.15E-22 | 5 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-9 | 6 | 37 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.014 | 7 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-10 | 38 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.867 | 44 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 53 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.26E-12 | 53 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 58 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MKEENIRKGP WYQEEDDRLK AFVTLLGLQR SGKSCRLRWL NYLRPYLKHS AITPQEEQII 60 LQLHQIWGNK WAKIARRLPG RTDNEIKNYW RTHLKKKIQI PTSLLNYNTT SSSSSNVFSM 120 ETSSLSDNTN NYLNHIMDSL QEGESVTTIE TSIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 5 | 98 | 4 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010696302.1 | 3e-65 | PREDICTED: transcription factor MYB59 | ||||
Swissprot | Q9SCP1 | 2e-43 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A0J8BAR0 | 6e-64 | A0A0J8BAR0_BETVU; Uncharacterized protein | ||||
STRING | XP_010696302.1 | 1e-64 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 1e-36 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_001144-RA |
Publications ? help Back to Top | |||
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