PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001118-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 382aa    MW: 44414.7 Da    PI: 8.4306
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001118-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000963153123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ Cg + s ks+L++H+ +H
  AHYPO_001118-RA 31 YYCEFCGICRSKKSLLNSHLISH 53
                     89******************996 PP
2zf-C2H219.72.2e-067495223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ Cg +F+ + +Lk+H+ +H
  AHYPO_001118-RA 74 TCEECGATFKKPAHLKQHLLSH 95
                     6******************999 PP
3zf-C2H2193.8e-06101125123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+  dC+ s++rk++L+rH+  H
  AHYPO_001118-RA 101 FSCSvnDCNASYRRKDHLNRHMLQH 125
                      89********************988 PP
4zf-C2H214.97.6e-05130155123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      +kCp  +C+k F  +sn  rH r  H
  AHYPO_001118-RA 130 FKCPieNCNKEFVVHSNVSRHVREfH 155
                      89*********************988 PP
5zf-C2H218.65.1e-06170194123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   Cgk F+  s+L++H  +H
  AHYPO_001118-RA 170 HVCQetGCGKEFKYASQLQKHAESH 194
                      789999***************9988 PP
6zf-C2H210.60.0018206229323
                      ET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                      C+  +C +sFs+ + L+ Hirt H
  AHYPO_001118-RA 206 CGdpKCMMSFSNLEGLREHIRTcH 229
                      5555888***************66 PP
7zf-C2H220.71.1e-06262286223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+   C+ sF++ksnL++Hi+  H
  AHYPO_001118-RA 262 ECNfeGCDHSFTTKSNLQQHINAvH 286
                      588889***************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355123153IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.853158IPR007087Zinc finger, C2H2
SMARTSM003550.0157395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.98673100IPR007087Zinc finger, C2H2
SuperFamilySSF576678.03E-1174125No hitNo description
Gene3DG3DSA:3.30.160.605.3E-874101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201101130IPR007087Zinc finger, C2H2
SMARTSM003555.6E-4101125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-10102127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280103125IPR007087Zinc finger, C2H2
SuperFamilySSF576672.47E-6111164No hitNo description
Gene3DG3DSA:3.30.160.602.6E-5128154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.037130155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803130160IPR007087Zinc finger, C2H2
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-6169194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0035170194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201170194IPR007087Zinc finger, C2H2
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
SMARTSM003558.7204229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
SMARTSM0035539232253IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.53E-8244299No hitNo description
PROSITE profilePS5015711.51261291IPR007087Zinc finger, C2H2
SMARTSM003558.2E-4261286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-8262287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280263286IPR007087Zinc finger, C2H2
SMARTSM0035515292318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280294318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
TSLLLLIGIA MGEEQKAREE FGPIFRDIRR YYCEFCGICR SKKSLLNSHL ISHHQEELEK  60
KKEIEGEGKK SSNTCEECGA TFKKPAHLKQ HLLSHSIERP FSCSVNDCNA SYRRKDHLNR  120
HMLQHEGKLF KCPIENCNKE FVVHSNVSRH VREFHKDKPK CYSEKGPDKH VCQETGCGKE  180
FKYASQLQKH AESHGKFFLK SSETFCGDPK CMMSFSNLEG LREHIRTCHQ YVKCEVCRTK  240
HLRKNYKRHL QTHEEHLPAT IECNFEGCDH SFTTKSNLQQ HINAVHLKLR PFMCGIPGCG  300
MMFAFKHVRD NHEKSFRHVY VPGDLEEFDE QFRSRPRGGR KRKIPCVETL MRKRITPPNL  360
CDSILSESSD FLSWLLSDDE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-137719419129PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-137719419129PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334342RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749253.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-127TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E80.0A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-124transcription factor IIIA