PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001031-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 556aa    MW: 62388.8 Da    PI: 8.0956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001031-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.5e-1646136199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+    +  s+ l++p +fa+++ +   e+    led++g++W+v+l  +k  g+  ++kGW eF +++g+k g+ +vF +++ s f  +v
  AHYPO_001031-RA  46 FFKVM--FGNDFSDVLYVPPRFAKTITEL--EGERTYLEDSTGQKWKVNL--SKVNGSLAFQKGWCEFSSSHGIKLGELLVFNYIKGSHF--NV 131
                      66777..344456789*******999544..34469**************..999999***************************98999..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      ++f +
  AHYPO_001031-RA 132 QIFGR 136
                      99976 PP
2B335.32.1e-114915533397
                      -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +k + l+++ g+ W v + ++++s r vl+ GW+ F kan++++gD + F++++ +++ ++v+v+
  AHYPO_001031-RA 491 GKLVFLRNSIGKDWPVVY-HDRYS-RQVLACGWEAFKKANNICAGDECSFEVNDIHKRIFCVRVL 553
                      45799*************.56666.568***********************65447766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-2344139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-2244139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3844137IPR003340B3 DNA binding domain
CDDcd100179.78E-1845134No hitNo description
SMARTSM010191.4E-1246137IPR003340B3 DNA binding domain
PfamPF023624.3E-1446136IPR003340B3 DNA binding domain
PROSITE profilePS5086311.491458555IPR003340B3 DNA binding domain
CDDcd100176.07E-6469554No hitNo description
Gene3DG3DSA:2.40.330.101.1E-10471552IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-11485553IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-8491551IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGFVGRLFTI QSRNMDDNPV ACAQCSRLCM SLHKTKHDTA PIVSSFFKVM FGNDFSDVLY  60
VPPRFAKTIT ELEGERTYLE DSTGQKWKVN LSKVNGSLAF QKGWCEFSSS HGIKLGELLV  120
FNYIKGSHFN VQIFGRSGCE KRVIFHENDH PKNRAKVATN SFPKSFPFDF SNKECTYPFT  180
DSVHDEVPIV SELNLSKDIR VNVPKQGNSN KRPNVGPTTD ILVDSYFMTD RNTSSAKEDA  240
GTNLFDLSVL EMSKTNIAAN GETTLSQEDD IDNLSVPLAY KKTDMKLDLK HTKKLQLVRS  300
TYTRVSKELC GKTQVQDDST DTKKRLFVQE QSDVLSNKKN LKVSSSVCNT PPISSRTLGK  360
PSTLIAPAET ARKSDKIMPS YLSGYCQPEG LANRIVKKEP KKNEDELFGD NCSSFYEDSE  420
INHDYGGVNL SPLGNDVKII GIVKPEPVYL CDDTPASFSR ITCSVPQDNE SFLELPEALQ  480
MKGRQCMRSM GKLVFLRNSI GKDWPVVYHD RYSRQVLACG WEAFKKANNI CAGDECSFEV  540
NDIHKRIFCV RVLNR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-15B3 family protein