PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001030-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 401aa    MW: 45600.8 Da    PI: 7.3156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001030-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.18.1e-19321231100
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+    ++ s+ l++p +fa+++++ +++     led++g++Wev+l  + + g+  ++kGW eF  +++++ gDf+vF + + s f  +v
  AHYPO_001030-RA  32 FFKVM--LGNHLSKVLIVPPRFAKTIMELERK--STYLEDSTGQKWEVYL--THNNGSLAFQKGWHEFFVDHNIQLGDFLVFNYFKGSHF--NV 117
                      78888..566666779**********766444..69**************..77777899***********************9988888..** PP

                      EEE-SS CS
               B3  95 kvfrks 100
                      ++f++s
  AHYPO_001030-RA 118 QIFDRS 123
                      ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-2530125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-2530125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.95830123IPR003340B3 DNA binding domain
CDDcd100173.09E-2131121No hitNo description
PfamPF023628.0E-1732122IPR003340B3 DNA binding domain
SMARTSM010191.7E-1232123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDKPEACAE CSRFCLSLHK SKLDPRPIVS SFFKVMLGNH LSKVLIVPPR FAKTIMELER  60
KSTYLEDSTG QKWEVYLTHN NGSLAFQKGW HEFFVDHNIQ LGDFLVFNYF KGSHFNVQIF  120
DRSGCEKPMI FSKKDYQKNR AKITKDFVPK RVHRDSSNKK IFANKCTNSF MDSKPDVDVR  180
QRKDAVHNVR KLHEIGEDVP RQETTKKRPK VVPITDMTRR NTRGNMCFQT PNTMLKADTS  240
INDEADWLST ECVALPNDTV SRAVMPLKVL YPGQSVAVPH TSEFSSPTSC GKVIVEQHEY  300
GENIGGSVVA DNPSCDSIII SNNGDRDEVL YIEAPEHDLC DSLSAPEFKI SCSVKTIVNS  360
ASQDEYEEEK VVWLVDQVGR IWPVMYNQRG KDKSQELHLL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855252.11e-102B3 domain-containing protein Os01g0905400-like isoform X1
RefseqXP_021855253.11e-102B3 domain-containing protein Os01g0905400-like isoform X2
TrEMBLA0A0K9QVV91e-101A0A0K9QVV9_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-14B3 family protein