PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000792-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 734aa    MW: 83617 Da    PI: 6.6534
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000792-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.82.7e-2163155190
             FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      +fY+++A+++GFs+r+++++ +    + +t+r+f+C + g+++ + ++  k++r+r+++r+gC+a +++ k++     +w+vt ++++HnHel 
  AHYPO_000792-RA  63 EFYCNFATQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQAKPTE-GKSQRNRKSSRCGCQAYMRIVKRSdfdVPEWRVTGFNNNHNHELL 155
                      6***************9998874556679***************9999.99*****************99998776789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1863155IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.792528564IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-7530562IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-5539566IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MQQEMSVNGN QDFESSENDT DFSQDNTGSI EEISEDAILS RQTSVNLVPF IGQRFVSQDA  60
AYEFYCNFAT QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQAKPTE GKSQRNRKSS  120
RCGCQAYMRI VKRSDFDVPE WRVTGFNNNH NHELLKSVDV PILSHCNISA DDKSRICMFA  180
KAGMSARQML RLMELEKGVK LGCLLFTELD IRNLLQSFRH IDKDNDAIDL VGMCKRLKDE  240
NPDFKYDFEL DGHNRLANIA WSYPSSAQQY EAFGDAILLE TTHRLDAYDM LLGLWIGVDN  300
YGFACLYRKA PQTVLTDQNM WLKEAIACVM PETKHAFSIR HIMANFSDWF YLPLGSRYDG  360
WKAEFYRLYS LESVDEFEVG WKEMVDRYGL QLNKHIISLY ALRNFWALSF LRHYFFAGFM  420
SKSVTDSVNA FIQRIVSAQS KLDCFIDKVA EIAEYKDHCG SKHKMKQNAQ KVSLKTGSPL  480
ESHAATVLTP FAFSVLQEEL VLAPQYASIL VSEGCFHIRH HTEIDGGWKV MWDPRQELIR  540
CSCHQFEFLG ILCRHILRVF STNNCFRIPD SYLPLRWHLV SKDNIEKEKI EKVKLLESLA  600
STIVSESVVA EERLDFACEQ MSMVLSHIKQ ISGLSDHDRH VNEMEFNSPS GSLILPEVED  660
SDGIVQSFTL ADLHESFLGK LKERSPNVGV GNVSRKRQRC CIPCCGQFGH DASNCPILGS  720
ESLHSNGDAL GFL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670905.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
RefseqXP_010670906.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A0K9QE150.0A0A0K9QE15_SPIOL; Uncharacterized protein
STRINGXP_010670905.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]