PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000597-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 273aa    MW: 29910.1 Da    PI: 8.3103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000597-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001488110123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+ksFs+   L  H  +H
  AHYPO_000597-RA  88 YECKTCNKSFSSFQALGGHRASH 110
                      99**********99999998887 PP
2zf-C2H211.80.00075183205123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  +s+   L  H+r+H
  AHYPO_000597-RA 183 HECGICGAEYSSGQALGGHMRRH 205
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.04188110IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-1288112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-488115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.99E-988110No hitNo description
PROSITE profilePS5015712.48788115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576677.99E-9178205No hitNo description
PfamPF139126.2E-11182207IPR007087Zinc finger, C2H2
SMARTSM003550.23183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58183205IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVAHQNNTNN MLIKGKRTKR SRPLSPSPLT TVSSTSTDGA ATTPSFSAEA EEEHMAHCLI  60
LLAQGNTSNN NIINNNSNTK DGVIMSSYEC KTCNKSFSSF QALGGHRASH KKTKPNLPLS  120
LFSVVNNNNN NNKNNDHRID QLFDQQQQQF NDHDGCTTTL SLKIPTPLLN LSNGNSNNKV  180
KVHECGICGA EYSSGQALGG HMRRHRPIGL ANTTTNDVVS TIDKTTTSTR NFLSLDLNLP  240
APEDQEQQQQ HRVFSSNEKT LVFSSQLVDC HY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021774557.13e-77zinc finger protein ZAT5-like
TrEMBLA0A0K9S1P01e-67A0A0K9S1P0_SPIOL; Uncharacterized protein
STRINGXP_010696311.14e-57(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.13e-38C2H2 family protein