PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000531-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C3H

Protein Properties

Length: 372aa MW: 41912.8 Da PI: 5.3272

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000531-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.6e-06	90	113	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ AHYPO_000531-RA 90 KSILCEFFKA-GQCTKGFKCKFSHD 113 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.394	88	115	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	88	113	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	88	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	90	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6	158	195	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.103	158	196	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	3.5E-16	216	296	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MPPKQQSKAD QAKKQKLVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKID PKKTDAKKKK 60 EEEKAREKEL NDLFKLAVTQ PKVPVGVDPK SILCEFFKAG QCTKGFKCKF SHDLNVQRKG 120 EKIDIYTDKR DDGTMEEWDQ ETLEKAIAEK SKEYNQNKPT DIVCKHFLDA VEKKQYGWFW 180 VCPNGGKSCH YRHALPPGYV LKSQMKALLE EEKDKMPIEE EIEEQRSKVK ASTPMTPELF 240 AEWKRKKTEA RAASLASQSE ERAKNDRMSG RELFMSNASL FVDDVGAWEQ YERDESENNE 300 PEVNGQSGKG DHGGSVHGHP DAASSSGAAA NGDADDVPDD IDDDLDDDEL EELEASLSRT 360 SIQIKEPDSG P*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MPPKQQSKAD QAKKQKLVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKID PKKTDAKKKK  60
EEEKAREKEL NDLFKLAVTQ PKVPVGVDPK SILCEFFKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYTDKR DDGTMEEWDQ ETLEKAIAEK SKEYNQNKPT DIVCKHFLDA VEKKQYGWFW  180
VCPNGGKSCH YRHALPPGYV LKSQMKALLE EEKDKMPIEE EIEEQRSKVK ASTPMTPELF  240
AEWKRKKTEA RAASLASQSE ERAKNDRMSG RELFMSNASL FVDDVGAWEQ YERDESENNE  300
PEVNGQSGKG DHGGSVHGHP DAASSSGAAA NGDADDVPDD IDDDLDDDEL EELEASLSRT  360
SIQIKEPDSG P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021730666.1	0.0	zinc finger CCCH domain-containing protein 11-like
Swissprot	Q0JHZ2	1e-172	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A0J8E1P0	0.0	A0A0J8E1P0_BETVU; Uncharacterized protein
STRING	XP_010696358.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-141	C3H family protein

Link Out ? help Back to Top
Phytozome	AHYPO_000531-RA

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]