PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000320-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

TCP

Protein Properties

Length: 266aa MW: 29318.4 Da PI: 9.0332

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000320-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.5	8.2e-37	47	154	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+++++++h kv+gR+RR+R++a+ca r+F+L++eLG+++d++ti+WLlqq++++i+++tgt++ +as++ +++ss+ +++ns s+ AHYPO_000320-RA 47 PPKRKSNKDRHKKVDGRGRRIRMPALCASRIFQLTKELGHKSDGETIQWLLQQSEQSIIAATGTGTMPASFStSSGSSVLEQNNSVSSgisgsl 140 689*************************************************************999998885555555555544333555555 PP TCP 89 .............k 89 + AHYPO_000320-RA 141 slingnlgrthfvD 154 55555555555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.5E-31	52	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.298	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MPTFLNNHQQ TNPYLDIKEP QILISNTNQI VTSNLDDNNS INKKQNPPKR KSNKDRHKKV 60 DGRGRRIRMP ALCASRIFQL TKELGHKSDG ETIQWLLQQS EQSIIAATGT GTMPASFSTS 120 SGSSVLEQNN SVSSGISGSL SLINGNLGRT HFVDGSWAHG SSLVHDFGFS SSSFLRQSMD 180 SRPKIGVQAM ETSNLNMGLV NYGQQQQQRD KLEIGLSQDN VNFGVLNYGA INQMYQQIRH 240 GRDEVDFSSD HHQNLVDDGG SQTSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021745438.1	1e-131	transcription factor TCP20-like
TrEMBL	A0A0K9S1K9	1e-119	A0A0K9S1K9_SPIOL; Uncharacterized protein
STRING	XP_010682712.1	1e-115	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-40	TCP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_000320-RA