PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9974s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 387aa MW: 42699.2 Da PI: 5.7227

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9974s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	110.8	9e-35	195	286	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs.ksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 lfqrlwseeDeivlLqG+idf tgks++dd+++f+e++k+sisf+v+ +q+ +Kir+LK+K+ k+k +f+k+hd+k+fe Araha.9974s0003.1.p 195 LFQRLWSEEDEIVLLQGMIDFCGVTGKSVFDDMNGFFEKLKDSISFDVKgVNQFHNKIRSLKNKYVVKKKS------GDFTKDHDKKCFE 278 79********************************************8469*********999888......78******* PP DUF573 91 lskkiWgs 98 l+k+iWgs Araha.9974s0003.1.p 279 LAKMIWGS 286 ****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-26	196	285	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAKKKQSQPL ATPSAAKKPS EVASTSKKPS EIPSPVKKPS GVTSPVKKPS GVTSPAKKPL 60 EVASPAKKPL EETSTTAKKK QPEPVKNPLP ESSSEEEEEE DSSSDEEEEP SKDSGEENPE 120 TAVVTNQSSV SELESETESE SDTETEPTAK TPTPAAPPAS LNKKRQSEGE PSTEEVNVSK 180 RAKTESETET AKKQLFQRLW SEEDEIVLLQ GMIDFCGVTG KSVFDDMNGF FEKLKDSISF 240 DVKGVNQFHN KIRSLKNKYV VKKKSGDFTK DHDKKCFELA KMIWGSDVDA TLVKSKRKIK 300 VDDSLKVDGV KVECDWFVRS FLVGAFKNLG AGVDEETLKE KWSLVPVKMR KRIEEKIKSV 360 QANEFKLMLQ KLEVLHEVSS MMAKSD*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAKKKQSQPL ATPSAAKKPS EVASTSKKPS EIPSPVKKPS GVTSPVKKPS GVTSPAKKPL  60
EVASPAKKPL EETSTTAKKK QPEPVKNPLP ESSSEEEEEE DSSSDEEEEP SKDSGEENPE  120
TAVVTNQSSV SELESETESE SDTETEPTAK TPTPAAPPAS LNKKRQSEGE PSTEEVNVSK  180
RAKTESETET AKKQLFQRLW SEEDEIVLLQ GMIDFCGVTG KSVFDDMNGF FEKLKDSISF  240
DVKGVNQFHN KIRSLKNKYV VKKKSGDFTK DHDKKCFELA KMIWGSDVDA TLVKSKRKIK  300
VDDSLKVDGV KVECDWFVRS FLVGAFKNLG AGVDEETLKE KWSLVPVKMR KRIEEKIKSV  360
QANEFKLMLQ KLEVLHEVSS MMAKSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9974s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020874716.1	0.0	probable transcription factor At4g00610
Swissprot	O65270	4e-78	STKLQ_ARATH; Probable transcription factor At4g00610
TrEMBL	D7MJ89	1e-172	D7MJ89_ARALL; Uncharacterized protein
STRING	scaffold_703950.1	1e-173	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00610.1	3e-78	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Araha.9974s0003.1.p