PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9617s0011.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 127aa    MW: 14271.6 Da    PI: 10.3257
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9617s0011.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.49.1e-122263256
                         HHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56
                          LAk+l+L +rqV vWFqNrRa+ k
  Araha.9617s0011.2.p  2 ALAKQLNLRTRQVEVWFQNRRARTK 26
                         69*********************98 PP
2HD-ZIP_I/II87.22.2e-282613191
          HD-ZIP_I/II 31 elareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                         +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  Araha.9617s0011.2.p  2 ALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELR-AL 61
                         79*******************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.584128IPR001356Homeobox domain
PfamPF000463.7E-9226IPR001356Homeobox domain
SuperFamilySSF466896.42E-10237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-10231IPR009057Homeodomain-like
PROSITE patternPS000270326IPR017970Homeobox, conserved site
CDDcd000864.03E-7329No hitNo description
SMARTSM003401.1E-262871IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-112862IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MALAKQLNLR TRQVEVWFQN RRARTKLKQT EVDCEYLKRC CENLTDENRR LQKEVSELRA  60
LKLSPHLYMH MKPPTTLTMC PSCERVAVTS SSSSVASPVM TSSSPMGPMS PWAAIPLRQR  120
PAAGSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12028RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9617s0011.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4407810.0AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene).
GenBankAY0995650.0AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
GenBankBT0087130.0BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882296.19e-88homeobox-leucine zipper protein HAT3
SwissprotP466023e-77HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLD7LRP73e-86D7LRP7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.5__2504__AT3G60390.15e-87(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-67homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]