PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.9617s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 28201.2 Da PI: 9.7349 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.8e-19 | 100 | 150 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++keq +Lee F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k Araha.9617s0011.1.p 100 RLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTK 150 679**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.2 | 1.3e-39 | 98 | 185 | 3 | 91 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 k+rlskeq+ +LEe+F+e+++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l Araha.9617s0011.1.p 98 KLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELR-AL 185 89***********************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.8E-24 | 1 | 97 | IPR006712 | HD-ZIP protein, N-terminal |
PROSITE profile | PS50071 | 16.115 | 92 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-13 | 94 | 156 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-18 | 98 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 99 | 150 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.66E-14 | 100 | 153 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 100 | 150 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 127 | 150 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.3E-11 | 152 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-26 | 152 | 195 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGERDDGLGL SLSLSLGFNH KDPSSRLNPM PLASYSSSSH MHMQQSNYSH PQKIQNTWIN 60 MFQSSERNSD MRSFLRGIDV NRAPSTVVVD VEDDGAGKLR LSKEQALVLE ETFKEHSTLN 120 PKQKMALAKQ LNLRTRQVEV WFQNRRARTK LKQTEVDCEY LKRCCENLTD ENRRLQKEVS 180 ELRALKLSPH LYMHMKPPTT LTMCPSCERV AVTSSSSSVA SPVMTSSSPM GPMSPWAAIP 240 LRQRPAAGSH * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 152 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.9617s0011.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ440781 | 0.0 | AJ440781.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT3 (hat3 gene). | |||
GenBank | AY099565 | 0.0 | AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds. | |||
GenBank | BT008713 | 0.0 | BT008713.1 Arabidopsis thaliana At3g60390 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191598.1 | 1e-145 | homeobox-leucine zipper protein 3 | ||||
Swissprot | P46602 | 1e-146 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | D7LRP7 | 1e-141 | D7LRP7_ARALL; Uncharacterized protein | ||||
STRING | AT3G60390.1 | 1e-144 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 1e-122 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Araha.9617s0011.1.p |
Publications ? help Back to Top | |||
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