PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9315s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 163aa    MW: 18079.4 Da    PI: 8.6287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9315s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-1488136153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          +++kGVr ++ +g+W AeI+dps    + r +lg+f tae Aaka+  a+ +l
  Araha.9315s0001.1.p  88 KKHKGVRKKP-SGKWSAEIWDPSL---KVRRWLGTFPTAEIAAKAYNDAAAEL 136
                          589****999.7*********943...5999***************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-1889137IPR001471AP2/ERF domain
PROSITE profilePS5103218.26889150IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1389136IPR016177DNA-binding domain
SMARTSM003802.2E-2489153IPR001471AP2/ERF domain
PRINTSPR003671.6E-690101IPR001471AP2/ERF domain
CDDcd000183.93E-1592123No hitNo description
PRINTSPR003671.6E-6112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MENSENVPSY DQNNNFTPYL TRDQEHVIMV TALRQVISNF GGDTPSPNSN AWEAHLPPLN  60
AGPCPLCSIT GCYGCVFPRH EEIIKKEKKH KGVRKKPSGK WSAEIWDPSL KVRRWLGTFP  120
TAEIAAKAYN DAAAELVVRR PARRGTKNGE EASTKKTTVE DD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9315s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246980.0BT024698.1 Arabidopsis thaliana At2g20350 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884195.11e-104ethylene-responsive transcription factor ERF120
SwissprotQ9SK678e-94EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLD7L2W01e-102D7L2W0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__3563__AT2G20350.11e-103(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.14e-86ERF family protein