PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9118s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 291aa    MW: 32095.7 Da    PI: 4.3622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9118s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2301.3e-0982127453
                  AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                           GVr ++ +g+++AeI+  +     + ++ +lg++ t+ eA ka++  + ++
  Araha.9118s0001.1.p  82 VGVRSRP-SGKFAAEIMNpF-----TkTKKWLGTYETPAEAEKAYVDKKVEY 127
                          7***9*9.7*********66.....3499****************9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-1031277IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.32E-1279120No hitNo description
SMARTSM003804.1E-479134IPR001471AP2/ERF domain
PROSITE profilePS5103212.61580140IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-1082127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-1283121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKSFVKPEKD SLLRTVRIIF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI TFLSQVSESS  60
QDRSNAIKTP RNKSTRQLKY PVGVRSRPSG KFAAEIMNPF TKTKKWLGTY ETPAEAEKAY  120
VDKKVEYDAL ASSGSAVSSS VVSVTSQCLR SPASASVSCV SADDLSKEKS TLNKDVAASS  180
DDSTKEVFTT FDFSDLKIPD LRFLAAEEDS MISDANGAEL DFDCFLSAEC NLLLDDYSLL  240
GNDFNISGFE NSLPSELPDC DFTEMERELD DFKFAYADQL TTPPLEFGCV *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9118s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792810.0AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence.
GenBankAK1191440.0AK119144.1 Arabidopsis thaliana At1g25470 mRNA for unknown protein, complete cds, clone: RAFL21-49-G19.
GenBankBT0052810.0BT005281.1 Arabidopsis thaliana At1g25470 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869603.11e-167ethylene-responsive transcription factor ERF116
RefseqXP_020869605.11e-167ethylene-responsive transcription factor ERF116
RefseqXP_020869606.11e-167ethylene-responsive transcription factor ERF116
SwissprotQ8GW171e-163EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLD7KAI21e-166D7KAI2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2778__AT1G25470.11e-167(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.21e-149ERF family protein